Variant report

Variant	rs2011689
Chromosome Location	chr8:64341554-64341555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1560506	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs919621	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9298076	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64339600-64341800	Enhancers	Fetal Muscle Leg	muscle
2	chr8:64339600-64342200	Enhancers	HSMMtube	muscle
3	chr8:64340200-64341600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr8:64340200-64342000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr8:64341200-64341600	Weak transcription	Psoas Muscle	Psoas

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links