Variant report

Variant	rs1560506
Chromosome Location	chr8:64354619-64354620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10435608	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10957284	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12678592	0.82[EUR][1000 genomes]
rs1367808	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1431592	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1560507	0.82[EUR][1000 genomes]
rs1821109	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2011689	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4512415	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7003246	0.81[EUR][1000 genomes]
rs919621	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9298076	0.95[ASN][1000 genomes]
rs993148	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs993750	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64354400-64355200	Enhancers	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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