Variant report
| Variant | rs993148 |
|---|---|
| Chromosome Location | chr8:64346513-64346514 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TTPA-1 | chr8:64346402-64346567 | XLOC_007101 |
| 2 | lnc-TTPA-1 | chr8:64346381-64346567 | ENSG00000253205 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs1019879 | 1.00[CHB][hapmap] |
| rs10435608 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10957284 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12678592 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1367806 | 1.00[CHB][hapmap] |
| rs1367807 | 1.00[CHB][hapmap] |
| rs1367808 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1431592 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1560506 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1560507 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1821109 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4512415 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4531090 | 1.00[CHB][hapmap] |
| rs6472102 | 0.89[EUR][1000 genomes] |
| rs7003246 | 0.91[EUR][1000 genomes] |
| rs7831118 | 0.95[ASN][1000 genomes] |
| rs919621 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs993750 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv890967 | chr8:64107847-64454446 | Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs993148 | SRSF9 | trans | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
