Variant report

Variant	rs1367807
Chromosome Location	chr8:64382112-64382113
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:64382112-64382319	HepG2	liver:	n/a	n/a
2	RAD21	chr8:64382106-64382374	H1-hESC	embryonic stem cell:	n/a	n/a
3	RAD21	chr8:64382096-64382340	SK-N-SH_RA	brain:	n/a	n/a
4	RAD21	chr8:64382081-64382447	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTCF	chr8:64382074-64382432	MCF-7	breast:	n/a	n/a
6	CTCF	chr8:64382080-64382230	MCF-7	breast:	n/a	n/a
7	CTCF	chr8:64382107-64382290	T-47D	breast:	n/a	n/a
8	RAD21	chr8:64382043-64382480	MCF-7	breast:	n/a	n/a
9	RAD21	chr8:64382072-64382416	H1-hESC	embryonic stem cell:	n/a	n/a
10	RAD21	chr8:64382096-64382426	A549	lung:	n/a	n/a
11	CTCF	chr8:64382110-64382405	GM12878	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NKAIN3-7	chr8:64379700-64382504	ENSG00000253894

Variant related genes	Relation type
ENSG00000253894	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1019879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504364	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1115753	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11775359	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11775983	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12115114	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13255857	0.90[EUR][1000 genomes]
rs13280126	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13280174	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13280950	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1367806	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs1431585	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1897311	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1897312	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2099257	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2116336	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2116337	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2116338	0.91[EUR][1000 genomes]
rs2195757	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2354895	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4531090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4739097	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6472109	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6980849	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7012613	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7817045	0.90[EUR][1000 genomes]
rs7823637	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7829623	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7831118	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7836363	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs919620	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64375800-64382200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:64375800-64382200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr8:64377200-64382400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:64381600-64383400	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr8:64382000-64382200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:64382000-64383200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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