Variant report

Variant	rs13280126
Chromosome Location	chr8:64472977-64472978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1019879	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10504364	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1115753	0.91[EUR][1000 genomes]
rs11775359	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11775983	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12115114	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13255857	0.93[EUR][1000 genomes]
rs13280174	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13280950	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1367807	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1431585	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1897311	0.91[EUR][1000 genomes]
rs1897312	0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2099257	0.90[EUR][1000 genomes]
rs2116336	0.91[EUR][1000 genomes]
rs2116337	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2195757	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2354895	0.89[EUR][1000 genomes]
rs4531090	0.85[CEU][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4737653	0.88[EUR][1000 genomes]
rs4739097	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6472109	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6472115	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6980849	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6999407	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7012613	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7817045	0.93[EUR][1000 genomes]
rs7823637	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7829623	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7831118	0.86[AMR][1000 genomes]
rs7836363	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs919620	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831343	chr8:64436268-64642328	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1023591	chr8:64446416-64477621	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13280126	MTFR1	cis	parietal	SCAN
rs13280126	CSPP1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64470800-64473200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:64471000-64473200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:64472200-64473400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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