Variant report

Variant	rs7817045
Chromosome Location	chr8:64436521-64436522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1019879	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs10504364	0.92[EUR][1000 genomes]
rs1115753	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11775359	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11775983	0.98[EUR][1000 genomes]
rs12115114	0.91[EUR][1000 genomes]
rs13255857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13280126	0.93[EUR][1000 genomes]
rs13280174	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13280950	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1367806	0.83[EUR][1000 genomes]
rs1367807	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs1431585	0.92[EUR][1000 genomes]
rs1897311	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1897312	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs2099257	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2116336	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2116337	0.97[EUR][1000 genomes]
rs2116338	0.83[EUR][1000 genomes]
rs2195757	0.97[EUR][1000 genomes]
rs2354895	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4531090	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes]
rs4737653	0.81[EUR][1000 genomes]
rs4739097	0.98[EUR][1000 genomes]
rs6472109	0.90[EUR][1000 genomes]
rs6472115	0.81[EUR][1000 genomes]
rs6472116	1.00[JPT][hapmap]
rs6980849	0.97[EUR][1000 genomes]
rs6999407	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7012613	0.97[EUR][1000 genomes]
rs7823637	0.97[EUR][1000 genomes]
rs7829623	0.97[EUR][1000 genomes]
rs7836363	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs919620	0.85[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831343	chr8:64436268-64642328	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7817045	CSPP1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64430200-64438600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr8:64436000-64436600	Enhancers	Brain Angular Gyrus	brain
3	chr8:64436000-64437200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:64436000-64438400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:64436200-64438200	Weak transcription	Psoas Muscle	Psoas
6	chr8:64436200-64440200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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