Variant report

Variant	rs6980849
Chromosome Location	chr8:64428643-64428644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1019879	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10504364	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1115753	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775359	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11775983	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12115114	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13255857	0.97[EUR][1000 genomes]
rs13280126	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13280174	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13280950	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1367806	0.86[EUR][1000 genomes]
rs1367807	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1431585	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1897311	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1897312	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2099257	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116336	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116337	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116338	0.85[EUR][1000 genomes]
rs2195757	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2354895	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4531090	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4739097	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472109	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999407	0.81[EUR][1000 genomes]
rs7012613	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817045	0.97[EUR][1000 genomes]
rs7823637	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7829623	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831118	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7836363	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs919620	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64427000-64428800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr8:64427600-64429200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr8:64427800-64428800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr8:64427800-64428800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr8:64428000-64429000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:64428000-64429200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:64428000-64429400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:64428000-64429400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr8:64428400-64429000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr8:64428400-64429200	Weak transcription	Fetal Brain Male	brain
11	chr8:64428400-64429200	Enhancers	Fetal Brain Female	brain
12	chr8:64428600-64429000	Enhancers	HUES48 Cell Line	embryonic stem cell

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