Variant report

Variant	rs919620
Chromosome Location	chr8:64376824-64376825
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1019879	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10504364	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1115753	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11775359	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11775983	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12115114	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13255857	0.90[EUR][1000 genomes]
rs13280126	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13280174	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13280950	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1367806	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1367807	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1431585	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1897311	0.94[EUR][1000 genomes]
rs1897312	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099257	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2116336	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2116337	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2116338	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2195757	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2354895	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4531090	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4739097	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6472109	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6980849	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7012613	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7817045	0.90[EUR][1000 genomes]
rs7823637	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7829623	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7831118	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7836363	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64373200-64381600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr8:64375600-64377000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr8:64375800-64382200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:64375800-64382200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:64376400-64377000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:64376800-64377000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:64376800-64377200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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