Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:64438367..64440116-chr8:64442186..64443907,2	K562	blood:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1019879	0.90[EUR][1000 genomes]
rs10504364	0.92[EUR][1000 genomes]
rs1115753	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11775359	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11775983	0.98[EUR][1000 genomes]
rs12115114	0.91[EUR][1000 genomes]
rs13280126	0.93[EUR][1000 genomes]
rs13280174	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13280950	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1367806	0.83[EUR][1000 genomes]
rs1367807	0.90[EUR][1000 genomes]
rs1431585	0.92[EUR][1000 genomes]
rs1897311	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1897312	0.87[EUR][1000 genomes]
rs2099257	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2116336	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2116337	0.97[EUR][1000 genomes]
rs2116338	0.83[EUR][1000 genomes]
rs2195757	0.97[EUR][1000 genomes]
rs2354895	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4531090	0.91[EUR][1000 genomes]
rs4737653	0.81[EUR][1000 genomes]
rs4739097	0.98[EUR][1000 genomes]
rs6472109	0.90[EUR][1000 genomes]
rs6472115	0.81[EUR][1000 genomes]
rs6980849	0.97[EUR][1000 genomes]
rs6999407	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7012613	0.97[EUR][1000 genomes]
rs7817045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823637	0.97[EUR][1000 genomes]
rs7829623	0.97[EUR][1000 genomes]
rs7836363	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs919620	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831343	chr8:64436268-64642328	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64436200-64440200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:64438600-64440400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

Quick Search: