Variant report

Variant	rs6999407
Chromosome Location	chr8:64477621-64477622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1115753	0.81[EUR][1000 genomes]
rs11775359	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11775983	0.80[EUR][1000 genomes]
rs13255857	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13280126	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13280174	0.88[EUR][1000 genomes]
rs13280950	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1377116	0.81[EUR][1000 genomes]
rs1897311	0.81[EUR][1000 genomes]
rs2116336	0.81[EUR][1000 genomes]
rs2116337	0.81[EUR][1000 genomes]
rs2195757	0.81[EUR][1000 genomes]
rs4531090	0.85[GIH][hapmap]
rs4737653	0.98[EUR][1000 genomes]
rs4739097	0.80[EUR][1000 genomes]
rs6472115	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6472116	1.00[JPT][hapmap]
rs6980849	0.81[EUR][1000 genomes]
rs7012613	0.81[EUR][1000 genomes]
rs7817045	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7823637	0.81[EUR][1000 genomes]
rs7829623	0.81[EUR][1000 genomes]
rs7836363	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831343	chr8:64436268-64642328	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1023591	chr8:64446416-64477621	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64473400-64478800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:64476200-64478000	Enhancers	Brain Germinal Matrix	brain
3	chr8:64476800-64479800	Enhancers	Fetal Brain Male	brain
4	chr8:64477000-64478000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:64477200-64478200	Enhancers	Fetal Brain Female	brain
6	chr8:64477200-64478400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:64477400-64477800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:64477600-64478600	Enhancers	Brain Cingulate Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links