Variant report

Variant	rs201249652
Chromosome Location	chr10:54785558-54785559
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MBL2-2	chr10:54785024-54785887	XLOC_008826

Extended variants
information (count: 44 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:44 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895404	chr10:54545590-54850707	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1043809	chr10:54645158-54860817	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540627	chr10:54645158-54860817	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv467201	chr10:54697623-54929003	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv550906	chr10:54697623-54929003	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv470939	chr10:54700783-54917339	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv467202	chr10:54735164-54830687	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv550907	chr10:54735164-54830687	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv1826571	chr10:54765608-54788821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv895405	chr10:54765608-54824741	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv508585	chr10:54769376-54796804	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv1829213	chr10:54780677-54788671	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv1832289	chr10:54780677-54788671	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv895406	chr10:54780677-54830687	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv3505395	chr10:54781546-54785944	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv3523695	chr10:54782396-54790044	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv3509840	chr10:54782746-54790644	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv3523693	chr10:54782796-54789894	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	esv18290	chr10:54783079-54788916	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	esv3503174	chr10:54783409-54788935	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	esv3523694	chr10:54783431-54788923	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	esv3523698	chr10:54783440-54789076	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	esv3503062	chr10:54783466-54788878	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
24	esv3502840	chr10:54783466-54788901	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
25	esv3502951	chr10:54783466-54788957	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
26	esv3523697	chr10:54783486-54788877	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
27	esv3503285	chr10:54783543-54788830	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
28	esv3523699	chr10:54783543-54788830	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	esv1819872	chr10:54783695-54788821	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
30	esv1821073	chr10:54783695-54788821	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
31	esv1830907	chr10:54783695-54788821	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
32	esv1843125	chr10:54783695-54788821	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
33	esv1845814	chr10:54783695-54788821	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
34	nsv550908	chr10:54784919-54788404	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
35	nsv550909	chr10:54784919-54788458	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
36	esv1820028	chr10:54784919-54788671	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
37	esv1821901	chr10:54784919-54788671	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
38	esv1831859	chr10:54784919-54788671	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
39	esv1845365	chr10:54784919-54788671	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
40	esv1821304	chr10:54784919-54794208	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
41	esv1828095	chr10:54784919-54794208	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
42	esv1851757	chr10:54784919-54794208	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
43	esv3508729	chr10:54784971-54789819	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
44	esv3510951	chr10:54784971-54789819	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54782400-54786000	Enhancers	Fetal Stomach	stomach
2	chr10:54783400-54789200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:54783600-54785600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr10:54783600-54785800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:54783600-54789000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:54784400-54785600	Flanking Active TSS	Fetal Kidney	kidney
7	chr10:54784600-54785600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:54784600-54785600	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr10:54784800-54785600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:54784800-54785600	Active TSS	Rectal Mucosa Donor 31	rectum
11	chr10:54784800-54789600	Weak transcription	Lung	lung
12	chr10:54785000-54785600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr10:54785000-54785600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr10:54785000-54785800	Active TSS	Rectal Smooth Muscle	rectum
15	chr10:54785200-54785600	Weak transcription	GM12878-XiMat	blood
16	chr10:54785200-54786000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr10:54785200-54786000	Enhancers	Placenta	Placenta
18	chr10:54785200-54786000	Enhancers	HepG2	liver
19	chr10:54785200-54789400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr10:54785200-54789400	Weak transcription	Pancreas	Pancrea
21	chr10:54785200-54789400	Weak transcription	NHEK	skin
22	chr10:54785200-54789600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr10:54785200-54789600	Weak transcription	Hela-S3	cervix
24	chr10:54785200-54789800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr10:54785400-54785600	Flanking Active TSS	Fetal Lung	lung
26	chr10:54785400-54785800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr10:54785400-54785800	Enhancers	Fetal Muscle Trunk	muscle
28	chr10:54785400-54785800	Enhancers	Ovary	ovary
29	chr10:54785400-54785800	Enhancers	HUVEC	blood vessel
30	chr10:54785400-54785800	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr10:54785400-54786200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr10:54785400-54786400	Enhancers	Stomach Mucosa	stomach
33	chr10:54785400-54787200	Enhancers	Fetal Intestine Small	intestine
34	chr10:54785400-54787600	Enhancers	Fetal Intestine Large	intestine
35	chr10:54785400-54789200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:54785400-54789600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:54785400-54789600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:54785400-54789800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links