Variant report

Variant	rs2013862
Chromosome Location	chr15:33143194-33143195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33142290..33144094-chr15:33145856..33147820,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs568503	1.00[EUR][1000 genomes]
rs73370880	1.00[EUR][1000 genomes]
rs73370897	1.00[EUR][1000 genomes]
rs73386825	1.00[EUR][1000 genomes]
rs73386832	1.00[EUR][1000 genomes]
rs73386837	1.00[EUR][1000 genomes]
rs73386839	1.00[EUR][1000 genomes]
rs73386841	1.00[EUR][1000 genomes]
rs73386848	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv832962	chr15:33111517-33239736	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33096200-33154000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr15:33096400-33159000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:33118600-33159000	Weak transcription	Gastric	stomach
4	chr15:33131200-33153800	Weak transcription	Fetal Kidney	kidney
5	chr15:33131800-33164800	Weak transcription	Pancreas	Pancrea
6	chr15:33132000-33148600	Weak transcription	Stomach Mucosa	stomach
7	chr15:33132400-33154000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr15:33132800-33154000	Weak transcription	Brain Angular Gyrus	brain
9	chr15:33133000-33148200	Weak transcription	Esophagus	oesophagus
10	chr15:33133000-33150400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr15:33133400-33143400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:33135800-33148200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:33136200-33144200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:33137800-33153600	Weak transcription	Fetal Thymus	thymus
15	chr15:33138800-33190600	Weak transcription	Thymus	Thymus
16	chr15:33139600-33145800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr15:33139600-33190600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr15:33140600-33143400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:33141400-33144000	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr15:33141600-33145200	Enhancers	Osteobl	bone
21	chr15:33141600-33145400	Enhancers	NHLF	lung
22	chr15:33141600-33145600	Enhancers	NHDF-Ad	bronchial
23	chr15:33141800-33146000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr15:33142000-33143800	Enhancers	NH-A	brain
25	chr15:33142000-33145200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr15:33142000-33145200	Enhancers	HSMM	muscle
27	chr15:33142000-33146200	Enhancers	HMEC	breast
28	chr15:33142200-33144000	Enhancers	HSMMtube	muscle
29	chr15:33142200-33144400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr15:33142200-33144600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:33142200-33145200	Enhancers	HUVEC	blood vessel
32	chr15:33142200-33145400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:33142200-33145400	Enhancers	Hela-S3	cervix
34	chr15:33142200-33145600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:33142200-33145600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:33142200-33145600	Enhancers	NHEK	skin
37	chr15:33142400-33143200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:33142400-33143400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:33142600-33143800	Weak transcription	HepG2	liver
40	chr15:33142600-33144400	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr15:33142600-33168200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr15:33143000-33143200	Enhancers	Placenta	Placenta
43	chr15:33143000-33144400	Enhancers	A549	lung

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