Variant report

Variant	rs73386841
Chromosome Location	chr15:33111395-33111396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1258744	1.00[AMR][1000 genomes]
rs1258802	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1258803	1.00[AMR][1000 genomes]
rs16959173	0.96[AFR][1000 genomes]
rs16959177	0.96[AFR][1000 genomes]
rs17228808	0.96[AFR][1000 genomes]
rs2013862	1.00[EUR][1000 genomes]
rs568503	1.00[EUR][1000 genomes]
rs57264322	0.96[AFR][1000 genomes]
rs58710136	1.00[AMR][1000 genomes]
rs73370833	1.00[AMR][1000 genomes]
rs73370837	1.00[AMR][1000 genomes]
rs73370842	1.00[AMR][1000 genomes]
rs73370880	1.00[EUR][1000 genomes]
rs73370897	1.00[EUR][1000 genomes]
rs73371036	1.00[EUR][1000 genomes]
rs73372913	1.00[AMR][1000 genomes]
rs73372959	1.00[AMR][1000 genomes]
rs73378924	1.00[AMR][1000 genomes]
rs73386817	1.00[AMR][1000 genomes]
rs73386825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73386832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73386837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73386839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73386848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73386860	0.90[AFR][1000 genomes]
rs73386863	0.90[AFR][1000 genomes]
rs73386866	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv832961	chr15:33021177-33134988	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv903977	chr15:33040782-33117302	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1482	chr15:33083166-33113644	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33061200-33141000	Weak transcription	Placenta	Placenta
2	chr15:33096200-33154000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr15:33096400-33111400	Weak transcription	HSMMtube	muscle
4	chr15:33096400-33116200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:33096400-33159000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:33103800-33139200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:33110800-33111800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:33110800-33112000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:33110800-33114000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:33111000-33111400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:33111000-33111400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:33111000-33111400	Enhancers	Adipose Nuclei	Adipose
13	chr15:33111000-33111400	Flanking Active TSS	Fetal Kidney	kidney
14	chr15:33111000-33111400	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr15:33111000-33111400	Enhancers	Fetal Thymus	thymus
16	chr15:33111000-33111400	Active TSS	Stomach Smooth Muscle	stomach
17	chr15:33111000-33111600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr15:33111000-33111600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:33111000-33111600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:33111000-33111600	Flanking Active TSS	A549	lung
21	chr15:33111000-33111800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr15:33111000-33111800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr15:33111000-33111800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:33111000-33111800	Flanking Active TSS	NHDF-Ad	bronchial
25	chr15:33111000-33111800	Enhancers	NHEK	skin
26	chr15:33111200-33111400	Enhancers	Colon Smooth Muscle	Colon
27	chr15:33111200-33111400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr15:33111200-33111400	Bivalent Enhancer	Fetal Lung	lung
29	chr15:33111200-33111400	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr15:33111200-33111600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr15:33111200-33111600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr15:33111200-33111600	Enhancers	Gastric	stomach
33	chr15:33111200-33111600	Enhancers	Pancreas	Pancrea
34	chr15:33111200-33111600	Flanking Active TSS	NHLF	lung
35	chr15:33111200-33111800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:33111200-33111800	Flanking Active TSS	NH-A	brain
37	chr15:33111200-33111800	Flanking Active TSS	Osteobl	bone
38	chr15:33111200-33112400	Enhancers	Fetal Stomach	stomach
39	chr15:33111200-33112400	Enhancers	HSMM	muscle
40	chr15:33111200-33130000	Weak transcription	Brain Inferior Temporal Lobe	brain

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