Variant report

Variant	rs73370842
Chromosome Location	chr15:33192030-33192031
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33191578..33193662-chr15:33205151..33207936,2	MCF-7	breast:
2	chr15:33191297..33193263-chr15:33193347..33195988,2	K562	blood:

Variant related genes	Relation type
ENSG00000248905	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1258744	1.00[AMR][1000 genomes]
rs1258802	1.00[AMR][1000 genomes]
rs1258803	1.00[AMR][1000 genomes]
rs56999001	1.00[AMR][1000 genomes]
rs57101742	1.00[AMR][1000 genomes]
rs59310964	1.00[AMR][1000 genomes]
rs59972399	1.00[AMR][1000 genomes]
rs60059020	1.00[AMR][1000 genomes]
rs60916301	1.00[AMR][1000 genomes]
rs73370833	1.00[AMR][1000 genomes]
rs73370837	1.00[AMR][1000 genomes]
rs73372913	1.00[AMR][1000 genomes]
rs73372959	1.00[AMR][1000 genomes]
rs73372977	1.00[AMR][1000 genomes]
rs73374818	1.00[AMR][1000 genomes]
rs73374820	1.00[AMR][1000 genomes]
rs73374840	1.00[AMR][1000 genomes]
rs73374844	1.00[AMR][1000 genomes]
rs73374886	1.00[AMR][1000 genomes]
rs73378924	1.00[AMR][1000 genomes]
rs73386817	1.00[AMR][1000 genomes]
rs73386825	1.00[AMR][1000 genomes]
rs73386832	1.00[AMR][1000 genomes]
rs73386837	1.00[AMR][1000 genomes]
rs73386839	1.00[AMR][1000 genomes]
rs73386841	1.00[AMR][1000 genomes]
rs73386848	1.00[AMR][1000 genomes]
rs73386866	1.00[AMR][1000 genomes]
rs8031743	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv832962	chr15:33111517-33239736	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv903978	chr15:33144202-33308641	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1041609	chr15:33148035-33355999	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv542339	chr15:33148035-33355999	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv903980	chr15:33149087-33264201	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
12	nsv568917	chr15:33167171-33304172	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33149000-33202000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr15:33154400-33192800	Weak transcription	Colonic Mucosa	Colon
3	chr15:33154400-33216800	Weak transcription	Fetal Thymus	thymus
4	chr15:33155000-33208200	Weak transcription	Fetal Kidney	kidney
5	chr15:33160000-33201800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:33162200-33202400	Weak transcription	Gastric	stomach
7	chr15:33166000-33202400	Weak transcription	Pancreas	Pancrea
8	chr15:33166200-33211800	Weak transcription	HSMMtube	muscle
9	chr15:33170800-33196200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:33170800-33200400	Weak transcription	NH-A	brain
11	chr15:33178800-33197600	Weak transcription	Osteobl	bone
12	chr15:33179000-33198000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr15:33180600-33196600	Weak transcription	Placenta	Placenta
14	chr15:33181800-33198800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:33181800-33201000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:33182000-33200600	Weak transcription	Fetal Stomach	stomach
17	chr15:33183600-33195000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:33188800-33192200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:33188800-33193000	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr15:33189600-33192400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr15:33189800-33192400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:33189800-33192800	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr15:33190000-33192400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:33190000-33192400	Strong transcription	HSMM	muscle
25	chr15:33190000-33192600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:33190200-33192400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr15:33190200-33192400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:33190200-33192400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:33190400-33192400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr15:33190400-33192400	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr15:33190600-33192400	Strong transcription	Thymus	Thymus
32	chr15:33190800-33192400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:33190800-33192600	Enhancers	Primary B cells from peripheral blood	blood
34	chr15:33190800-33192600	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr15:33190800-33192800	Enhancers	Primary B cells from cord blood	blood
36	chr15:33190800-33193000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:33191000-33201000	Weak transcription	Esophagus	oesophagus
38	chr15:33191000-33210800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr15:33191400-33192600	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr15:33191400-33193000	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr15:33191400-33193400	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr15:33191600-33195800	Weak transcription	NHLF	lung
43	chr15:33191600-33196400	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr15:33191600-33197600	Weak transcription	Lung	lung
45	chr15:33191800-33192200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr15:33191800-33192400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
47	chr15:33191800-33192400	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr15:33191800-33193600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr15:33191800-33200000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr15:33191800-33214600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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