Variant report
| Variant | rs2014451 |
|---|---|
| Chromosome Location | chr10:58620629-58620630 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10763421 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10763425 | 0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10763429 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10763430 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10763431 | 0.94[ASN][1000 genomes] |
| rs10825907 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10825908 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10825910 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10825911 | 0.91[ASN][1000 genomes] |
| rs10825916 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11005561 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12572501 | 0.89[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1536083 | 0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1536084 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1536085 | 0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1914552 | 0.85[AMR][1000 genomes] |
| rs1914553 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1914554 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1925291 | 0.84[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1925296 | 0.84[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4582894 | 0.89[ASN][1000 genomes] |
| rs6481237 | 0.91[ASN][1000 genomes] |
| rs7069239 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv551064 | chr10:58457011-58702440 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | esv2758223 | chr10:58490630-58689953 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv2759758 | chr10:58490630-58689953 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv2757390 | chr10:58567723-58644512 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv551100 | chr10:58602006-58636572 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv895510 | chr10:58602006-58672533 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv947641 | chr10:58620064-58685420 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:58618600-58636000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
