Variant report

Variant	rs2015464
Chromosome Location	chr11:71290670-71290671
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:71279845..71280406-chr11:71290008..71290749,2	MCF-7	breast:
2	chr11:71163473..71165824-chr11:71289975..71292795,2	MCF-7	breast:
3	chr11:71278628..71280477-chr11:71289049..71291000,2	MCF-7	breast:
4	chr11:71279425..71280036-chr11:71290519..71291383,2	MCF-7	breast:
5	chr11:71185954..71187783-chr11:71290414..71293087,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172893	Chromatin interaction
ENSG00000248903	Chromatin interaction
ENSG00000172890	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11607338	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12421579	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	esv3372246	chr11:71223101-71435819	Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv825988	chr11:71277262-71294289	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv975851	chr11:71278888-71295301	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3444414	chr11:71286604-71290802	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71285600-71291400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:71289000-71291000	Weak transcription	Fetal Kidney	kidney
3	chr11:71289000-71291600	Weak transcription	Gastric	stomach
4	chr11:71289400-71291600	Enhancers	Fetal Muscle Leg	muscle
5	chr11:71290400-71290800	Bivalent Enhancer	Hela-S3	cervix
6	chr11:71290400-71291000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr11:71290400-71291000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:71290400-71291000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:71290400-71291000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr11:71290400-71291200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:71290400-71291200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:71290400-71291400	Enhancers	Right Atrium	heart
13	chr11:71290400-71292000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr11:71290400-71293400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr11:71290400-71293600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:71290600-71290800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:71290600-71291000	Enhancers	H9 Cell Line	embryonic stem cell
18	chr11:71290600-71291000	Enhancers	Fetal Muscle Trunk	muscle
19	chr11:71290600-71291000	Bivalent Enhancer	HepG2	liver
20	chr11:71290600-71291600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:71290600-71291800	Enhancers	Duodenum Smooth Muscle	Duodenum

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