Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11724057	0.83[GIH][hapmap]
rs11725404	0.83[GIH][hapmap]
rs11731216	0.82[AMR][1000 genomes]
rs1450903	1.00[GIH][hapmap]
rs17090551	0.94[ASN][1000 genomes]
rs17090555	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs56957332	1.00[ASN][1000 genomes]
rs59386765	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551657	0.83[GIH][hapmap]
rs6551661	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6551663	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.94[ASN][1000 genomes]
rs6815347	0.83[GIH][hapmap]
rs6829758	1.00[GIH][hapmap]
rs6837612	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6840216	0.88[CEU][hapmap]
rs6842293	1.00[GIH][hapmap]
rs73823262	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73823263	0.94[ASN][1000 genomes]
rs73823273	0.94[ASN][1000 genomes]
rs73823275	0.92[ASN][1000 genomes]
rs7662566	0.88[CEU][hapmap]
rs7667328	1.00[CEU][hapmap];0.83[GIH][hapmap]
rs7671478	1.00[GIH][hapmap]
rs7683391	1.00[GIH][hapmap]
rs7694929	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829949	chr4:62615637-62761629	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428760	chr4:62649399-62824542	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62712600-62720600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:62718600-62719400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr4:62718600-62719600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr4:62718600-62719800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr4:62718600-62720600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:62718600-62720600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:62718800-62719400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:62718800-62719400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr4:62718800-62720400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:62719000-62719400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr4:62719000-62719800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:62719200-62720600	Enhancers	HUES48 Cell Line	embryonic stem cell

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