Variant report

Variant	rs73823275
Chromosome Location	chr4:62733599-62733600
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17090551	0.92[ASN][1000 genomes]
rs2015569	0.92[ASN][1000 genomes]
rs56957332	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59386765	0.92[ASN][1000 genomes]
rs6551661	0.92[ASN][1000 genomes]
rs6551663	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73823250	0.90[AMR][1000 genomes]
rs73823262	0.91[ASN][1000 genomes]
rs73823263	0.92[ASN][1000 genomes]
rs73823273	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829949	chr4:62615637-62761629	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428760	chr4:62649399-62824542	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv516728	chr4:62733437-62739674	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62724600-62742800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:62732000-62738600	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:62732800-62733800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:62732800-62734200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:62733000-62734200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links