Variant report

Variant	rs2015586
Chromosome Location	chr10:119021737-119021738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs363223	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs363224	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs363225	0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7085415	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7100827	0.81[EUR][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs2015586	PDZD8	cis	Artery Tibial	GTEx
rs2015586	SLC18A2	Cis_1M	lymphoblastoid	RTeQTL
rs2015586	PDZD8	cis	Artery Aorta	GTEx
rs2015586	PDZD8	cis	Esophagus Muscularis	GTEx
rs2015586	PDZD8	Cis_1M	lymphoblastoid	RTeQTL
rs2015586	SLC18A2	cis	Artery Tibial	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119017400-119034000	Weak transcription	Gastric	stomach
2	chr10:119018400-119023800	Enhancers	Fetal Thymus	thymus
3	chr10:119019600-119023000	Enhancers	Ovary	ovary
4	chr10:119019800-119023200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:119019800-119031200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:119020000-119021800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:119020000-119034000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:119020000-119042600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:119020600-119024000	Weak transcription	Primary T cells from cord blood	blood
10	chr10:119020600-119024200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:119020600-119028000	Weak transcription	Thymus	Thymus
12	chr10:119020600-119035000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:119020600-119043200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:119020600-119045400	Weak transcription	Fetal Heart	heart
15	chr10:119021000-119022000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:119021200-119022000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:119021400-119021800	Weak transcription	Fetal Intestine Large	intestine
18	chr10:119021400-119043200	Weak transcription	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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