Variant report

Variant	rs201585
Chromosome Location	chr20:22026441-22026442
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1160312	0.81[ASN][1000 genomes]
rs127747	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1887056	0.82[ASN][1000 genomes]
rs201559	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs201567	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201586	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs201587	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs201588	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201589	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs201590	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201592	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201593	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201594	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2876631	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4813446	0.82[ASN][1000 genomes]
rs6036026	0.82[ASN][1000 genomes]
rs6036027	0.82[ASN][1000 genomes]
rs6036029	0.82[ASN][1000 genomes]
rs6047844	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6113483	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6113495	0.88[EUR][1000 genomes]
rs6113496	0.82[ASN][1000 genomes]
rs6132477	0.88[EUR][1000 genomes]
rs6137527	0.88[EUR][1000 genomes]
rs913063	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv432114	chr20:22012900-22148200	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22026400-22027200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr20:22026400-22027800	Enhancers	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links