Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1160312	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs127747	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1887056	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs201559	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201567	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs201585	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs201587	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201588	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs201589	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201590	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs201592	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs201593	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201594	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2876631	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4813446	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6036026	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6036027	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6036029	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6047799	0.87[EUR][1000 genomes]
rs6047844	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6113496	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs913063	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv432114	chr20:22012900-22148200	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22026400-22027200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr20:22026400-22027800	Enhancers	Dnd41	blood
3	chr20:22026800-22027000	Active TSS	Duodenum Mucosa	Duodenum
4	chr20:22026800-22027200	Enhancers	H1 Cell Line	embryonic stem cell

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