Variant report
| Variant | rs6047799 |
|---|---|
| Chromosome Location | chr20:21986312-21986313 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs127747 | 0.91[EUR][1000 genomes] |
| rs1555264 | 0.81[AMR][1000 genomes] |
| rs1555265 | 0.81[AMR][1000 genomes] |
| rs1980551 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1980552 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1986765 | 0.81[AMR][1000 genomes] |
| rs201547 | 0.80[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs201548 | 0.81[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs201559 | 0.91[EUR][1000 genomes] |
| rs201567 | 0.91[EUR][1000 genomes] |
| rs201586 | 0.87[EUR][1000 genomes] |
| rs201587 | 0.87[EUR][1000 genomes] |
| rs201588 | 0.84[EUR][1000 genomes] |
| rs201590 | 0.84[EUR][1000 genomes] |
| rs201592 | 0.84[EUR][1000 genomes] |
| rs201593 | 0.84[EUR][1000 genomes] |
| rs201594 | 0.83[EUR][1000 genomes] |
| rs2254540 | 0.81[AMR][1000 genomes] |
| rs2424418 | 0.81[AMR][1000 genomes] |
| rs2424419 | 0.81[AMR][1000 genomes] |
| rs2424421 | 0.81[AMR][1000 genomes] |
| rs2424427 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2876631 | 0.84[EUR][1000 genomes] |
| rs6036003 | 0.81[AMR][1000 genomes] |
| rs6036007 | 0.80[AMR][1000 genomes] |
| rs6047768 | 0.81[AMR][1000 genomes] |
| rs6047769 | 0.81[AMR][1000 genomes] |
| rs6047798 | 0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6047844 | 0.84[EUR][1000 genomes] |
| rs6106438 | 0.81[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs6113456 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1058137 | chr20:21549350-22295051 | Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:21984600-21986400 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 2 | chr20:21985200-21987400 | Weak transcription | Fetal Stomach | stomach |
