Variant report

Variant	rs2016881
Chromosome Location	chr3:43794660-43794661
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43793402..43795925-chr3:43797960..43799733,2	K562	blood:
2	chr3:43788680..43791474-chr3:43794569..43797297,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17075997	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35774943	1.00[AFR][1000 genomes]
rs73089215	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv876733	chr3:43768018-43854669	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43790200-43794800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:43790200-43795000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:43790200-43795000	Weak transcription	HSMMtube	muscle
4	chr3:43790200-43795000	Weak transcription	NH-A	brain
5	chr3:43790200-43795000	Weak transcription	Osteobl	bone
6	chr3:43790400-43795000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:43790400-43795000	Weak transcription	HMEC	breast
8	chr3:43790400-43795400	Weak transcription	A549	lung
9	chr3:43790600-43794800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:43790600-43795000	Weak transcription	Adipose Nuclei	Adipose
11	chr3:43790600-43796000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:43793400-43795600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:43793800-43798800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:43793800-43800200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:43794000-43795600	Enhancers	HSMM	muscle
16	chr3:43794200-43795000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr3:43794200-43795600	Enhancers	NHDF-Ad	bronchial
18	chr3:43794200-43795800	Enhancers	Lung	lung
19	chr3:43794200-43796000	Enhancers	Fetal Intestine Small	intestine
20	chr3:43794200-43796000	Enhancers	Fetal Muscle Leg	muscle
21	chr3:43794200-43796600	Enhancers	Placenta	Placenta
22	chr3:43794200-43797200	Enhancers	Hela-S3	cervix
23	chr3:43794400-43794800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr3:43794400-43794800	Weak transcription	NHEK	skin
25	chr3:43794400-43794800	Weak transcription	NHLF	lung
26	chr3:43794400-43796000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:43794400-43796600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:43794400-43796600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:43794400-43796600	Enhancers	HUVEC	blood vessel
30	chr3:43794400-43797400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr3:43794400-43800000	Weak transcription	Right Ventricle	heart
32	chr3:43794600-43794800	Weak transcription	Fetal Intestine Large	intestine
33	chr3:43794600-43796000	Enhancers	Skeletal Muscle Male	skeletal muscle

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