Variant report

Variant	rs73089215
Chromosome Location	chr3:43775630-43775631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43731645..43733891-chr3:43774294..43776729,2	MCF-7	breast:
2	chr3:43768950..43772362-chr3:43772704..43776401,5	K562	blood:
3	chr3:43731248..43733875-chr3:43774279..43776094,2	K562	blood:
4	chr3:43768252..43771488-chr3:43772704..43776863,5	K562	blood:
5	chr3:43775591..43778541-chr3:43809723..43813323,3	K562	blood:

Variant related genes	Relation type
ENSG00000160746	Chromatin interaction
ENSG00000011198	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17075971	0.81[ASN][1000 genomes]
rs2016881	1.00[AFR][1000 genomes]
rs35774943	1.00[AFR][1000 genomes]
rs3774790	0.91[ASN][1000 genomes]
rs3774792	0.89[ASN][1000 genomes]
rs4682900	0.89[ASN][1000 genomes]
rs56136723	1.00[ASN][1000 genomes]
rs73089232	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv876733	chr3:43768018-43854669	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43755400-43778200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:43755600-43776200	Weak transcription	Fetal Brain Female	brain
3	chr3:43755600-43778200	Weak transcription	Brain Germinal Matrix	brain
4	chr3:43755600-43778200	Weak transcription	Fetal Stomach	stomach
5	chr3:43755600-43784000	Weak transcription	Ovary	ovary
6	chr3:43756200-43778400	Weak transcription	Fetal Muscle Leg	muscle
7	chr3:43759600-43778400	Weak transcription	Right Ventricle	heart
8	chr3:43759600-43778600	Weak transcription	Gastric	stomach
9	chr3:43760000-43777800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:43760200-43777200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr3:43760200-43778800	Weak transcription	Aorta	Aorta
12	chr3:43761000-43777600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr3:43761200-43776800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr3:43761600-43784200	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:43762000-43776000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:43762200-43778600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:43762400-43777400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:43763200-43777000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:43767600-43778400	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr3:43768800-43778400	Weak transcription	Dnd41	blood
21	chr3:43769800-43777600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:43770200-43778200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr3:43770400-43778600	Weak transcription	Psoas Muscle	Psoas
24	chr3:43771000-43778200	Weak transcription	Liver	Liver
25	chr3:43772200-43777800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr3:43772400-43777800	Weak transcription	Stomach Mucosa	stomach
27	chr3:43772400-43778600	Weak transcription	Colonic Mucosa	Colon
28	chr3:43772400-43778600	Weak transcription	Pancreas	Pancrea
29	chr3:43772800-43777800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr3:43772800-43778400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr3:43773000-43776400	Weak transcription	Fetal Intestine Large	intestine
32	chr3:43773800-43775800	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr3:43774000-43777400	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr3:43774200-43775800	Enhancers	H1 Cell Line	embryonic stem cell
35	chr3:43774200-43776000	Enhancers	Hela-S3	cervix
36	chr3:43774200-43776200	Enhancers	HSMMtube	muscle
37	chr3:43774200-43777200	Strong transcription	K562	blood
38	chr3:43774200-43778800	Enhancers	NHLF	lung
39	chr3:43774400-43775800	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr3:43774400-43775800	Enhancers	H9 Cell Line	embryonic stem cell
41	chr3:43774400-43775800	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr3:43774400-43775800	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr3:43774400-43775800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr3:43774400-43775800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr3:43774400-43775800	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr3:43774400-43775800	Enhancers	Adipose Nuclei	Adipose
47	chr3:43774400-43775800	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr3:43774400-43776200	Enhancers	Muscle Satellite Cultured Cells	--
49	chr3:43774400-43776200	Enhancers	HSMM	muscle
50	chr3:43774400-43776200	Enhancers	NH-A	brain

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