Variant report

Variant	rs4682900
Chromosome Location	chr3:43717530-43717531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43708734..43721567-chr3:43726609..43735922,29	K562	blood:
2	chr3:43713088..43715824-chr3:43716519..43719193,2	MCF-7	breast:
3	chr3:43716954..43719427-chr3:43728298..43730262,2	MCF-7	breast:
4	chr3:43716311..43718019-chr3:43727681..43730024,2	K562	blood:
5	chr3:43716348..43721609-chr3:43731020..43734011,10	K562	blood:

Variant related genes	Relation type
ENSG00000011198	Chromatin interaction
ENSG00000160746	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1021049	0.85[CHD][hapmap]
rs1038202	0.85[CHD][hapmap]
rs11714015	0.85[CHD][hapmap]
rs13084604	0.85[CHD][hapmap]
rs13092838	0.85[CHD][hapmap]
rs1482648	0.85[CHD][hapmap]
rs1482651	0.85[CHD][hapmap]
rs1482652	0.85[CHD][hapmap]
rs17075971	0.85[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs2054554	0.85[CHD][hapmap]
rs2170219	0.85[CHD][hapmap]
rs2219902	0.85[CHD][hapmap]
rs3733155	0.83[CEU][hapmap]
rs3755602	0.85[CHD][hapmap]
rs3772165	0.85[CHD][hapmap]
rs3774790	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3774792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3821381	0.85[CHD][hapmap]
rs4234430	0.90[CHB][hapmap]
rs4325902	0.80[AFR][1000 genomes]
rs4432612	0.89[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4682690	0.85[CHD][hapmap]
rs4682691	0.84[CHD][hapmap]
rs4682892	0.85[CHD][hapmap]
rs56136723	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6441786	0.85[CHD][hapmap]
rs6441787	1.00[CHB][hapmap]
rs6768557	0.85[CHD][hapmap]
rs6809134	0.85[CHD][hapmap]
rs73089215	0.89[ASN][1000 genomes]
rs7428158	0.84[CHD][hapmap]
rs7616708	0.85[CHD][hapmap]
rs7621271	0.85[CHD][hapmap]
rs7630010	0.90[CHB][hapmap]
rs7653738	0.85[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv3345913	chr3:43698997-43729867	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4682900	NKTR	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43713600-43718000	Enhancers	K562	blood
2	chr3:43715800-43719600	Enhancers	Primary neutrophils fromperipheralblood	blood

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