Variant report

Variant	rs6441787
Chromosome Location	chr3:43673637-43673638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43665014..43668308-chr3:43672190..43675503,3	K562	blood:
2	chr3:43663658..43668073-chr3:43669747..43674340,6	MCF-7	breast:
3	chr3:43673500..43676059-chr3:43681996..43684476,2	K562	blood:
4	chr3:43672724..43677719-chr3:43679824..43684004,5	K562	blood:

Variant related genes	Relation type
ENSG00000160746	Chromatin interaction

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs1021049	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1026887	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1038202	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10440111	0.98[ASN][1000 genomes]
rs11130006	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706130	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11708097	0.82[ASN][1000 genomes]
rs11710079	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11710107	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11710955	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11713382	0.82[ASN][1000 genomes]
rs11714015	1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11716569	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11717380	1.00[JPT][hapmap]
rs11717449	0.82[ASN][1000 genomes]
rs11718482	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12152260	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374079	0.91[ASN][1000 genomes]
rs13072613	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13075520	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13084604	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13086999	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13092838	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13098202	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1384434	1.00[JPT][hapmap]
rs1471643	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1471644	0.87[YRI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1482648	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1482649	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1482650	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1482651	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1482652	1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1482653	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17030517	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17407745	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17407870	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17407912	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17408925	0.87[ASN][1000 genomes]
rs2010778	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2054552	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2054553	0.91[ASN][1000 genomes]
rs2054554	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2086653	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2127725	1.00[ASN][1000 genomes]
rs2170219	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2199892	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2219902	1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2372433	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2372436	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2372487	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2372488	0.84[AMR][1000 genomes]
rs2888312	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs34279519	0.83[ASN][1000 genomes]
rs34548104	0.82[ASN][1000 genomes]
rs34898315	0.82[ASN][1000 genomes]
rs34919938	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35015014	0.82[ASN][1000 genomes]
rs35133889	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35418463	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3755602	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3772165	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3772167	1.00[JPT][hapmap]
rs3774790	1.00[CHB][hapmap]
rs3774792	1.00[CHB][hapmap]
rs3821381	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3902207	0.87[ASN][1000 genomes]
rs4234430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4325902	0.87[ASN][1000 genomes]
rs4516582	0.93[ASN][1000 genomes]
rs4564953	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4585169	0.83[EUR][1000 genomes]
rs4682690	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4682691	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4682892	1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4682897	1.00[ASN][1000 genomes]
rs4682898	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682900	1.00[CHB][hapmap]
rs6441776	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6441779	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6441780	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6441781	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441785	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441786	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs66842319	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67032102	0.82[ASN][1000 genomes]
rs6763321	0.87[ASN][1000 genomes]
rs6767983	0.82[ASN][1000 genomes]
rs6768557	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6775337	1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6779864	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782442	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6793877	0.83[ASN][1000 genomes]
rs6797855	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6809134	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7428158	0.85[EUR][1000 genomes]
rs7616708	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7621271	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7630010	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7648082	0.89[ASN][1000 genomes]
rs7653738	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9311341	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9682975	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9829081	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9839558	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9851894	0.96[ASN][1000 genomes]
rs9863479	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9878330	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43664200-43688400	Weak transcription	Aorta	Aorta
2	chr3:43671200-43673800	Weak transcription	NH-A	brain
3	chr3:43671200-43680200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:43671600-43673800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:43672200-43680000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:43672400-43675400	Enhancers	K562	blood
7	chr3:43672800-43673800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:43673400-43673800	Enhancers	NHEK	skin
9	chr3:43673400-43675000	Enhancers	HUVEC	blood vessel
10	chr3:43673400-43675000	Enhancers	Osteobl	bone
11	chr3:43673600-43674000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:43673600-43674000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:43673600-43674200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:43673600-43674200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:43673600-43674200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr3:43673600-43674200	Enhancers	Fetal Muscle Leg	muscle
17	chr3:43673600-43674200	Enhancers	Placenta	Placenta
18	chr3:43673600-43674200	Enhancers	Hela-S3	cervix
19	chr3:43673600-43674200	Enhancers	NHDF-Ad	bronchial
20	chr3:43673600-43674400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:43673600-43674400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:43673600-43674400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:43673600-43674400	Flanking Active TSS	A549	lung
24	chr3:43673600-43674400	Enhancers	HMEC	breast
25	chr3:43673600-43674400	Enhancers	HSMMtube	muscle
26	chr3:43673600-43674400	Enhancers	NHLF	lung
27	chr3:43673600-43674800	Enhancers	HSMM	muscle
28	chr3:43673600-43675000	Enhancers	Muscle Satellite Cultured Cells	--

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