Variant report
| Variant | rs2054553 |
|---|---|
| Chromosome Location | chr3:43600634-43600635 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:43540200-43602200 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 2 | chr3:43544000-43617600 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 3 | chr3:43553000-43601600 | Weak transcription | Colon Smooth Muscle | Colon |
| 4 | chr3:43556200-43624800 | Weak transcription | Rectal Smooth Muscle | rectum |
| 5 | chr3:43558600-43625600 | Weak transcription | Lung | lung |
| 6 | chr3:43560800-43618000 | Weak transcription | Brain Hippocampus Middle | brain |
| 7 | chr3:43561200-43601200 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
| 8 | chr3:43561600-43601000 | Weak transcription | Pancreas | Pancrea |
| 9 | chr3:43561800-43602000 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 10 | chr3:43571000-43613600 | Weak transcription | Gastric | stomach |
| 11 | chr3:43573800-43601400 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 12 | chr3:43573800-43617800 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
| 13 | chr3:43574800-43662400 | Weak transcription | Right Ventricle | heart |
| 14 | chr3:43576200-43601000 | Weak transcription | Esophagus | oesophagus |
| 15 | chr3:43576200-43623800 | Weak transcription | Psoas Muscle | Psoas |
| 16 | chr3:43576400-43613600 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 17 | chr3:43576400-43621200 | Weak transcription | NHEK | skin |
| 18 | chr3:43577600-43625400 | Weak transcription | HUVEC | blood vessel |
| 19 | chr3:43580600-43647600 | Weak transcription | Brain Angular Gyrus | brain |
| 20 | chr3:43580800-43613800 | Weak transcription | Aorta | Aorta |
| 21 | chr3:43581800-43601400 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
| 22 | chr3:43582000-43601600 | Weak transcription | HepG2 | liver |
| 23 | chr3:43582400-43607000 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 24 | chr3:43582600-43617800 | Weak transcription | Muscle Satellite Cultured Cells | -- |
| 25 | chr3:43582800-43602200 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 26 | chr3:43584000-43632800 | Weak transcription | Small Intestine | intestine |
| 27 | chr3:43584600-43614000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 28 | chr3:43585600-43602200 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 29 | chr3:43585600-43624400 | Weak transcription | Fetal Lung | lung |
| 30 | chr3:43585800-43603800 | Weak transcription | Placenta Amnion | Placenta Amnion |
| 31 | chr3:43585800-43617800 | Weak transcription | Brain Cingulate Gyrus | brain |
| 32 | chr3:43587000-43647200 | Weak transcription | Fetal Kidney | kidney |
| 33 | chr3:43587200-43632000 | Weak transcription | Fetal Muscle Trunk | muscle |
| 34 | chr3:43587800-43634000 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 35 | chr3:43588800-43617800 | Weak transcription | Brain Anterior Caudate | brain |
| 36 | chr3:43589000-43618000 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 37 | chr3:43589000-43648400 | Weak transcription | Primary Natural Killer cells fromperipheralblood | blood |
| 38 | chr3:43589200-43617600 | Weak transcription | Colonic Mucosa | Colon |
| 39 | chr3:43589600-43603400 | Weak transcription | Fetal Brain Male | brain |
| 40 | chr3:43589600-43617400 | Weak transcription | Primary T cells from cord blood | blood |
| 41 | chr3:43589600-43625600 | Weak transcription | Brain Substantia Nigra | brain |
| 42 | chr3:43590000-43602200 | Weak transcription | NHLF | lung |
| 43 | chr3:43590600-43611400 | Weak transcription | Brain Germinal Matrix | brain |
| 44 | chr3:43590600-43636400 | Weak transcription | Primary T cells fromperipheralblood | blood |
| 45 | chr3:43591000-43601400 | Weak transcription | Ovary | ovary |
| 46 | chr3:43591000-43618000 | Weak transcription | Brain Inferior Temporal Lobe | brain |
| 47 | chr3:43591000-43618200 | Weak transcription | Left Ventricle | heart |
| 48 | chr3:43591200-43607200 | Weak transcription | H1 Cell Line | embryonic stem cell |
| 49 | chr3:43591200-43607200 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 50 | chr3:43591400-43601000 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
