Variant report

Variant	rs11715896
Chromosome Location	chr3:43433362-43433363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43431381..43434005-chr3:43447529..43451601,3	K562	blood:
2	chr3:43432210..43433882-chr3:43437782..43439964,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1038202	1.00[CEU][hapmap];0.92[GIH][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs10461013	0.82[CEU][hapmap]
rs11130004	0.85[CEU][hapmap]
rs11708173	0.86[CHD][hapmap]
rs12374079	0.85[EUR][1000 genomes]
rs12492694	0.81[EUR][1000 genomes]
rs12638282	0.85[CEU][hapmap]
rs13066902	0.83[EUR][1000 genomes]
rs1351631	0.85[CEU][hapmap]
rs1384435	0.85[CEU][hapmap]
rs1564434	0.85[CEU][hapmap]
rs17408925	0.87[EUR][1000 genomes]
rs1975997	0.85[CEU][hapmap]
rs2054553	0.85[EUR][1000 genomes]
rs2054554	1.00[CEU][hapmap];0.92[GIH][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs2101064	0.82[CEU][hapmap]
rs2127725	0.81[EUR][1000 genomes]
rs34279519	0.89[EUR][1000 genomes]
rs3772165	1.00[CEU][hapmap];0.92[GIH][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs3772167	1.00[CEU][hapmap]
rs3821381	1.00[CEU][hapmap];0.92[GIH][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs3902207	0.86[EUR][1000 genomes]
rs4128530	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs4407383	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs4505672	0.84[CEU][hapmap]
rs4547674	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs4561805	0.83[EUR][1000 genomes]
rs4682690	1.00[CEU][hapmap];0.92[GIH][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs4682691	0.89[CEU][hapmap];0.88[GIH][hapmap]
rs6441786	0.81[EUR][1000 genomes]
rs6763321	0.85[EUR][1000 genomes]
rs6769576	0.82[EUR][1000 genomes]
rs737516	0.85[CEU][hapmap]
rs7616708	1.00[CEU][hapmap];0.92[GIH][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs7621271	1.00[CEU][hapmap];0.92[GIH][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs9311340	0.92[CEU][hapmap]
rs9311341	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9815196	0.85[CEU][hapmap]
rs9824990	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs9830697	0.85[CEU][hapmap]
rs9845142	0.83[EUR][1000 genomes]
rs9851894	0.82[EUR][1000 genomes]
rs9862259	0.82[EUR][1000 genomes]
rs9878330	0.84[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11715896	SNRK	cis	cerebellum	SCAN
rs11715896	RPL14	cis	parietal	SCAN
rs11715896	MRPS18A	trans	cerebellum	SCAN
rs11715896	ANO10	cis	Whole Blood	GTEx
rs11715896	C3orf39	cis	cerebellum	SCAN

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
2	chr3:43421400-43436200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:43421400-43454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:43427400-43433400	Enhancers	Primary T cells fromperipheralblood	blood
5	chr3:43428400-43436400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:43428400-43441800	Weak transcription	Fetal Stomach	stomach
7	chr3:43428800-43447600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:43429200-43433400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr3:43429200-43436600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr3:43430000-43449400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:43430000-43460200	Weak transcription	Aorta	Aorta
12	chr3:43430600-43433400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:43430600-43433400	Enhancers	Fetal Muscle Leg	muscle
14	chr3:43430600-43442600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:43431000-43435800	Weak transcription	Colon Smooth Muscle	Colon
16	chr3:43431200-43436000	Enhancers	HUVEC	blood vessel
17	chr3:43431600-43435600	Weak transcription	Fetal Lung	lung
18	chr3:43431800-43433400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr3:43431800-43433600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:43431800-43436200	Weak transcription	Fetal Kidney	kidney
21	chr3:43431800-43440400	Weak transcription	HSMMtube	muscle
22	chr3:43431800-43447000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:43432000-43433600	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr3:43432000-43435000	Weak transcription	Right Ventricle	heart
25	chr3:43432000-43435800	Weak transcription	Osteobl	bone
26	chr3:43432000-43445600	Weak transcription	K562	blood
27	chr3:43432000-43446600	Weak transcription	HSMM	muscle
28	chr3:43432000-43450800	Weak transcription	Esophagus	oesophagus
29	chr3:43432000-43453600	Weak transcription	Gastric	stomach
30	chr3:43432000-43460200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr3:43432000-43477800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:43432200-43433400	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr3:43432200-43433400	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr3:43432200-43435000	Weak transcription	Placenta	Placenta
35	chr3:43432200-43435000	Weak transcription	Left Ventricle	heart
36	chr3:43432200-43435000	Weak transcription	Right Atrium	heart
37	chr3:43432200-43435200	Weak transcription	Adipose Nuclei	Adipose
38	chr3:43432200-43435600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr3:43432200-43435600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr3:43432200-43441200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr3:43432200-43443400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr3:43432200-43447000	Weak transcription	Small Intestine	intestine
43	chr3:43432200-43448000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:43432200-43453800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr3:43432400-43434400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr3:43432400-43435200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr3:43432400-43435200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:43432400-43447600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr3:43432400-43453800	Weak transcription	Primary T cells from cord blood	blood
50	chr3:43432800-43433400	Enhancers	Pancreas	Pancrea

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