Variant report

Variant	rs4128530
Chromosome Location	chr3:43435580-43435581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43429740..43432675-chr3:43434360..43436612,3	K562	blood:
2	chr3:43430134..43432675-chr3:43434360..43436612,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1013758	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1038202	0.81[CEU][hapmap]
rs10461013	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11130004	0.88[CEU][hapmap]
rs11130005	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11715896	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs12492694	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12638282	0.88[CEU][hapmap]
rs13066902	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13095863	1.00[YRI][hapmap]
rs1351631	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs1384435	0.88[CEU][hapmap]
rs1564434	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs1588026	0.83[AFR][1000 genomes]
rs1842806	0.85[EUR][1000 genomes]
rs1842807	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1975997	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs2054554	0.81[CEU][hapmap]
rs2101064	0.83[CEU][hapmap]
rs34823561	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3772160	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs3772165	0.81[CEU][hapmap]
rs3772167	0.82[CEU][hapmap]
rs3821381	0.81[CEU][hapmap]
rs4264704	0.83[EUR][1000 genomes]
rs4407383	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs4505672	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs4547674	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs4561805	0.94[EUR][1000 genomes]
rs4682690	0.84[CEU][hapmap]
rs61102363	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6769576	0.88[CEU][hapmap];0.94[EUR][1000 genomes]
rs6793392	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs737516	0.88[CEU][hapmap]
rs7616708	0.81[CEU][hapmap]
rs7621271	0.81[CEU][hapmap]
rs7621298	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs9311340	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs9311341	0.82[CEU][hapmap]
rs9809643	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs9815196	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs9817430	0.86[ASN][1000 genomes]
rs9824990	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs9830697	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs9835793	0.83[EUR][1000 genomes]
rs9845142	0.94[EUR][1000 genomes]
rs9862259	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9881028	0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4128530	ANO10	cis	Whole Blood	GTEx

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
2	chr3:43421400-43436200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:43421400-43454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:43428400-43436400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:43428400-43441800	Weak transcription	Fetal Stomach	stomach
6	chr3:43428800-43447600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:43429200-43436600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr3:43430000-43449400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:43430000-43460200	Weak transcription	Aorta	Aorta
10	chr3:43430600-43442600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:43431000-43435800	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:43431200-43436000	Enhancers	HUVEC	blood vessel
13	chr3:43431600-43435600	Weak transcription	Fetal Lung	lung
14	chr3:43431800-43436200	Weak transcription	Fetal Kidney	kidney
15	chr3:43431800-43440400	Weak transcription	HSMMtube	muscle
16	chr3:43431800-43447000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:43432000-43435800	Weak transcription	Osteobl	bone
18	chr3:43432000-43445600	Weak transcription	K562	blood
19	chr3:43432000-43446600	Weak transcription	HSMM	muscle
20	chr3:43432000-43450800	Weak transcription	Esophagus	oesophagus
21	chr3:43432000-43453600	Weak transcription	Gastric	stomach
22	chr3:43432000-43460200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr3:43432000-43477800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:43432200-43435600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr3:43432200-43435600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr3:43432200-43441200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr3:43432200-43443400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr3:43432200-43447000	Weak transcription	Small Intestine	intestine
29	chr3:43432200-43448000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:43432200-43453800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr3:43432400-43447600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr3:43432400-43453800	Weak transcription	Primary T cells from cord blood	blood
33	chr3:43433200-43447600	Weak transcription	Lung	lung
34	chr3:43433400-43435600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr3:43433400-43435600	Weak transcription	Psoas Muscle	Psoas
36	chr3:43433400-43448600	Weak transcription	NHEK	skin
37	chr3:43433400-43458800	Weak transcription	Pancreas	Pancrea
38	chr3:43434000-43435600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr3:43434200-43436200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr3:43434200-43436400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr3:43434400-43436400	Enhancers	Primary hematopoietic stem cells	blood
42	chr3:43434400-43436600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr3:43434600-43436400	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr3:43434800-43435800	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr3:43435000-43435800	Enhancers	Left Ventricle	heart
46	chr3:43435000-43435800	Enhancers	Right Atrium	heart
47	chr3:43435000-43436000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr3:43435000-43436400	Enhancers	Placenta	Placenta
49	chr3:43435000-43436400	Enhancers	Right Ventricle	heart
50	chr3:43435000-43437200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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