Variant report

Variant	rs9824990
Chromosome Location	chr3:43476348-43476349
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1013758	0.88[CEU][hapmap]
rs1038202	0.81[CEU][hapmap]
rs10461013	0.92[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs11130004	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11130005	0.88[CEU][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs11715896	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs12486736	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12492694	0.92[CEU][hapmap];0.98[EUR][1000 genomes]
rs12638282	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13066902	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1351631	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1384435	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1564434	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17030517	0.82[CEU][hapmap]
rs1842806	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1842807	0.89[CEU][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs1975997	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2054554	0.81[CEU][hapmap]
rs2101064	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3772160	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs3772165	0.81[CEU][hapmap]
rs3772167	0.82[CEU][hapmap]
rs3821381	0.81[CEU][hapmap]
rs4128530	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs4264704	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4407383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4505672	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4547674	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4561805	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682690	0.84[CEU][hapmap]
rs61102363	0.86[EUR][1000 genomes]
rs6441786	0.81[CEU][hapmap]
rs6769576	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs737516	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7616708	0.81[CEU][hapmap]
rs7621271	0.81[CEU][hapmap]
rs9311340	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9311341	0.82[CEU][hapmap]
rs9809643	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs9814737	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9815196	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9829067	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9830697	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9835793	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9845142	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9862259	0.92[CEU][hapmap];0.97[EUR][1000 genomes]
rs9873316	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9881028	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9824990	ANO10	cis	Whole Blood	GTEx

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43432000-43477800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:43443000-43495600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:43447800-43481200	Weak transcription	Lung	lung
4	chr3:43455600-43484400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:43455800-43477200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:43457000-43492800	Weak transcription	K562	blood
7	chr3:43459800-43496400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:43460800-43496400	Weak transcription	HSMM	muscle
9	chr3:43465200-43477400	Weak transcription	NHLF	lung
10	chr3:43465800-43476600	Weak transcription	Ovary	ovary
11	chr3:43466600-43496400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:43467800-43477200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:43468000-43477000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:43468000-43477200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr3:43468000-43477200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:43468200-43477200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr3:43468400-43477000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:43468400-43478800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:43468600-43477200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr3:43470400-43476600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:43473400-43477400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:43473400-43478800	Weak transcription	Fetal Intestine Small	intestine
23	chr3:43473400-43541400	Weak transcription	Aorta	Aorta
24	chr3:43473600-43479000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr3:43473600-43479400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr3:43473600-43481000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr3:43473800-43480400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr3:43473800-43484600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr3:43474000-43477000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr3:43474000-43478000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:43474200-43480400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr3:43474200-43484600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:43474200-43504400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr3:43475200-43476400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr3:43475400-43477600	Enhancers	Fetal Lung	lung
36	chr3:43476000-43476400	Enhancers	HUVEC	blood vessel
37	chr3:43476000-43478400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr3:43476200-43476400	Enhancers	NHDF-Ad	bronchial
39	chr3:43476200-43478800	Weak transcription	Left Ventricle	heart

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