Variant report

Variant	rs9830697
Chromosome Location	chr3:43532051-43532052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1013758	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs1038202	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs10461013	0.96[CEU][hapmap];0.85[JPT][hapmap];0.98[EUR][1000 genomes]
rs10461015	0.85[EUR][1000 genomes]
rs11130004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130005	0.92[CEU][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes]
rs11715896	0.85[CEU][hapmap]
rs12374079	0.82[EUR][1000 genomes]
rs12486736	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12492694	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs12638282	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13066902	0.87[EUR][1000 genomes]
rs13319147	0.87[EUR][1000 genomes]
rs1351631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1384435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1564434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17030517	0.86[CEU][hapmap]
rs17408925	0.83[EUR][1000 genomes]
rs1842806	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1842807	0.93[CEU][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes]
rs1975997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054553	0.82[EUR][1000 genomes]
rs2054554	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs2101064	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34279519	0.88[EUR][1000 genomes]
rs3772160	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs3772165	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs3772167	0.86[CEU][hapmap]
rs3821381	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs3902207	0.84[EUR][1000 genomes]
rs4128530	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs4264704	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4407383	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4505672	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4547674	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4561805	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4682690	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs61102363	0.98[EUR][1000 genomes]
rs6441786	0.85[CEU][hapmap]
rs6763321	0.82[EUR][1000 genomes]
rs6769576	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs737516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7616708	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs7621271	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs9311340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9311341	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs9809643	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs9814737	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9815196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9824990	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9826275	0.81[EUR][1000 genomes]
rs9829067	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9834786	0.85[EUR][1000 genomes]
rs9835664	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9835793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9845142	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9862259	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs9873316	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9878330	0.82[EUR][1000 genomes]
rs9881028	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428738	chr3:43491435-43651168	Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43473400-43541400	Weak transcription	Aorta	Aorta
2	chr3:43497000-43539400	Weak transcription	HSMM	muscle
3	chr3:43497200-43532600	Weak transcription	K562	blood
4	chr3:43504800-43553400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:43515000-43532400	Weak transcription	Pancreas	Pancrea
6	chr3:43519600-43539000	Weak transcription	Right Atrium	heart
7	chr3:43519800-43538200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:43522000-43532200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:43522200-43538200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:43522200-43538800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:43522400-43539600	Weak transcription	HSMMtube	muscle
12	chr3:43524200-43539600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:43524600-43532400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:43526000-43560800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr3:43526400-43538400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:43527000-43532200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:43527000-43532200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr3:43527000-43539000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr3:43527200-43560200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:43527400-43532200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:43527800-43532200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr3:43527800-43532200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr3:43531000-43532400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:43531200-43532200	Weak transcription	Ovary	ovary
25	chr3:43531200-43539000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:43531200-43542600	Weak transcription	Psoas Muscle	Psoas
27	chr3:43531400-43532600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr3:43531400-43532800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:43531400-43533200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:43531600-43532200	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr3:43531600-43532200	Enhancers	Primary T cells from cord blood	blood
32	chr3:43531600-43532400	Enhancers	Fetal Lung	lung
33	chr3:43531600-43532800	Enhancers	H9 Cell Line	embryonic stem cell
34	chr3:43531600-43533000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr3:43532000-43533000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr3:43532000-43533000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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