Variant report

Variant	rs4561805
Chromosome Location	chr3:43479685-43479686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10461013	0.87[EUR][1000 genomes]
rs11130004	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11130005	0.80[EUR][1000 genomes]
rs11715896	0.83[EUR][1000 genomes]
rs12486736	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12492694	0.98[EUR][1000 genomes]
rs12638282	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13066902	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1351631	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1384435	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1564434	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1842806	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1842807	0.89[EUR][1000 genomes]
rs1975997	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2101064	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3772160	0.82[EUR][1000 genomes]
rs4128530	0.94[EUR][1000 genomes]
rs4264704	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4407383	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4505672	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4547674	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61102363	0.86[EUR][1000 genomes]
rs6769576	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs737516	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9311340	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9809643	0.82[EUR][1000 genomes]
rs9814737	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9815196	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9824990	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9829067	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9830697	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9835793	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9845142	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9862259	0.97[EUR][1000 genomes]
rs9873316	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9881028	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4561805	ANO10	cis	Whole Blood	GTEx

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43443000-43495600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:43447800-43481200	Weak transcription	Lung	lung
3	chr3:43455600-43484400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:43457000-43492800	Weak transcription	K562	blood
5	chr3:43459800-43496400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:43460800-43496400	Weak transcription	HSMM	muscle
7	chr3:43466600-43496400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:43473400-43541400	Weak transcription	Aorta	Aorta
9	chr3:43473600-43481000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:43473800-43480400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:43473800-43484600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr3:43474200-43480400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:43474200-43484600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:43474200-43504400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr3:43476400-43484800	Weak transcription	HUVEC	blood vessel
16	chr3:43477400-43481200	Weak transcription	Ovary	ovary
17	chr3:43477600-43485400	Weak transcription	Fetal Lung	lung
18	chr3:43478800-43479800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:43479200-43481200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:43479400-43486200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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