Variant report

Variant	rs61102363
Chromosome Location	chr3:43539293-43539294
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43538037..43539732-chr3:43544566..43547525,2	K562	blood:
2	chr3:43538412..43541207-chr3:43562401..43564884,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1013758	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1038202	0.82[EUR][1000 genomes]
rs10461013	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10461015	0.85[EUR][1000 genomes]
rs11130004	0.93[EUR][1000 genomes]
rs11130005	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12374079	0.81[EUR][1000 genomes]
rs12486736	0.94[EUR][1000 genomes]
rs12492694	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12638282	0.94[EUR][1000 genomes]
rs13066902	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13319147	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1351631	0.98[EUR][1000 genomes]
rs1384435	0.94[EUR][1000 genomes]
rs1564434	0.98[EUR][1000 genomes]
rs17408925	0.82[EUR][1000 genomes]
rs1842806	0.95[EUR][1000 genomes]
rs1842807	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1975997	0.98[EUR][1000 genomes]
rs2054553	0.81[EUR][1000 genomes]
rs2054554	0.81[EUR][1000 genomes]
rs2101064	0.94[EUR][1000 genomes]
rs34279519	0.86[EUR][1000 genomes]
rs3772160	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3772165	0.81[EUR][1000 genomes]
rs3821381	0.81[EUR][1000 genomes]
rs3902207	0.82[EUR][1000 genomes]
rs4128530	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4264704	0.98[EUR][1000 genomes]
rs4407383	0.86[EUR][1000 genomes]
rs4505672	0.95[EUR][1000 genomes]
rs4547674	0.86[EUR][1000 genomes]
rs4561805	0.86[EUR][1000 genomes]
rs4682690	0.80[EUR][1000 genomes]
rs6763321	0.81[EUR][1000 genomes]
rs6769576	0.86[EUR][1000 genomes]
rs737516	0.94[EUR][1000 genomes]
rs7616708	0.81[EUR][1000 genomes]
rs7621271	0.81[EUR][1000 genomes]
rs9311340	0.98[EUR][1000 genomes]
rs9311341	0.80[EUR][1000 genomes]
rs9809643	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9814737	0.93[EUR][1000 genomes]
rs9815196	0.98[EUR][1000 genomes]
rs9824990	0.86[EUR][1000 genomes]
rs9826275	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9829067	0.94[EUR][1000 genomes]
rs9830697	0.98[EUR][1000 genomes]
rs9834786	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9835664	0.88[EUR][1000 genomes]
rs9835793	0.98[EUR][1000 genomes]
rs9845142	0.86[EUR][1000 genomes]
rs9852783	0.81[ASN][1000 genomes]
rs9862259	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9873316	0.93[EUR][1000 genomes]
rs9878330	0.80[EUR][1000 genomes]
rs9881028	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428738	chr3:43491435-43651168	Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43473400-43541400	Weak transcription	Aorta	Aorta
2	chr3:43497000-43539400	Weak transcription	HSMM	muscle
3	chr3:43504800-43553400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:43522400-43539600	Weak transcription	HSMMtube	muscle
5	chr3:43524200-43539600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:43526000-43560800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:43527200-43560200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:43531200-43542600	Weak transcription	Psoas Muscle	Psoas
9	chr3:43532400-43540800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:43532600-43540800	Weak transcription	Spleen	Spleen
11	chr3:43533000-43553000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:43533200-43544800	Weak transcription	K562	blood
13	chr3:43533800-43539800	Weak transcription	Primary T cells from cord blood	blood
14	chr3:43538000-43539400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:43538000-43540800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr3:43538200-43539600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr3:43538200-43539800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:43538200-43539800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr3:43538200-43539800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr3:43538200-43539800	Enhancers	NH-A	brain
21	chr3:43538200-43540200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:43538200-43540200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr3:43538200-43540200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:43538200-43540200	Enhancers	HMEC	breast
25	chr3:43538200-43540200	Enhancers	NHEK	skin
26	chr3:43538400-43540000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr3:43538400-43540000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:43538400-43541600	Enhancers	Adipose Nuclei	Adipose
29	chr3:43538400-43545200	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr3:43538600-43539800	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr3:43538600-43540400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:43538600-43540400	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr3:43538800-43539800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:43538800-43539800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:43538800-43540000	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr3:43538800-43540000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:43538800-43540000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr3:43539000-43539600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr3:43539000-43539800	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr3:43539000-43540000	Enhancers	H1 Cell Line	embryonic stem cell
41	chr3:43539000-43540000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:43539000-43540000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr3:43539000-43540000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr3:43539000-43540000	Enhancers	NHLF	lung
45	chr3:43539000-43540600	Enhancers	Lung	lung
46	chr3:43539000-43540800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr3:43539000-43542800	Enhancers	Left Ventricle	heart
48	chr3:43539000-43545400	Enhancers	HUVEC	blood vessel
49	chr3:43539200-43539600	Weak transcription	Right Atrium	heart
50	chr3:43539200-43540200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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