Variant report

Variant	rs9835664
Chromosome Location	chr3:43532832-43532833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10461013	0.88[EUR][1000 genomes]
rs11130004	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11130005	0.82[EUR][1000 genomes]
rs12486736	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12638282	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1351631	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1384435	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1564434	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1842806	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1842807	0.81[EUR][1000 genomes]
rs1975997	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2101064	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3772160	0.82[EUR][1000 genomes]
rs4264704	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4505672	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61102363	0.88[EUR][1000 genomes]
rs737516	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9311340	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9809643	0.84[EUR][1000 genomes]
rs9814737	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9815196	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9829067	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9830697	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9835793	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9873316	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9881028	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428738	chr3:43491435-43651168	Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43473400-43541400	Weak transcription	Aorta	Aorta
2	chr3:43497000-43539400	Weak transcription	HSMM	muscle
3	chr3:43504800-43553400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:43519600-43539000	Weak transcription	Right Atrium	heart
5	chr3:43519800-43538200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:43522200-43538200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:43522200-43538800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:43522400-43539600	Weak transcription	HSMMtube	muscle
9	chr3:43524200-43539600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:43526000-43560800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:43526400-43538400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:43527000-43539000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:43527200-43560200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:43531200-43539000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:43531200-43542600	Weak transcription	Psoas Muscle	Psoas
16	chr3:43531400-43533200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:43531600-43533000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr3:43532000-43533000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr3:43532000-43533000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:43532200-43533000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:43532200-43533000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr3:43532200-43533000	Weak transcription	Primary T cells from cord blood	blood
23	chr3:43532200-43533200	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr3:43532400-43533000	Enhancers	Pancreas	Pancrea
25	chr3:43532400-43540800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:43532600-43533200	Enhancers	K562	blood
27	chr3:43532600-43538200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr3:43532600-43539000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:43532600-43540800	Weak transcription	Spleen	Spleen
30	chr3:43532800-43539000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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