Variant report

Variant	rs9834786
Chromosome Location	chr3:43633320-43633321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1013758	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10461013	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10461015	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130004	0.88[EUR][1000 genomes]
rs11130005	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12486736	0.89[EUR][1000 genomes]
rs12492694	0.81[ASN][1000 genomes]
rs12638282	0.89[EUR][1000 genomes]
rs13319147	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13433789	0.85[AMR][1000 genomes]
rs1351631	0.85[EUR][1000 genomes]
rs1384435	0.89[EUR][1000 genomes]
rs1564434	0.85[EUR][1000 genomes]
rs1842806	0.82[EUR][1000 genomes]
rs1842807	0.84[ASN][1000 genomes]
rs1975997	0.85[EUR][1000 genomes]
rs2101064	0.89[EUR][1000 genomes]
rs3772160	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4264704	0.85[EUR][1000 genomes]
rs4505672	0.82[EUR][1000 genomes]
rs61102363	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs737516	0.89[EUR][1000 genomes]
rs9311340	0.85[EUR][1000 genomes]
rs9809643	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9814737	0.88[EUR][1000 genomes]
rs9815196	0.85[EUR][1000 genomes]
rs9826275	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9829067	0.89[EUR][1000 genomes]
rs9830697	0.85[EUR][1000 genomes]
rs9835793	0.85[EUR][1000 genomes]
rs9852783	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9873316	0.88[EUR][1000 genomes]
rs9881028	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428738	chr3:43491435-43651168	Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9834786	ANO10	cis	Whole Blood	GTEx

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43574800-43662400	Weak transcription	Right Ventricle	heart
2	chr3:43580600-43647600	Weak transcription	Brain Angular Gyrus	brain
3	chr3:43587000-43647200	Weak transcription	Fetal Kidney	kidney
4	chr3:43587800-43634000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:43589000-43648400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:43590600-43636400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr3:43614600-43653800	Weak transcription	HepG2	liver
8	chr3:43618400-43639400	Weak transcription	Liver	Liver
9	chr3:43618600-43644000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr3:43618600-43649600	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:43618600-43654400	Weak transcription	Colonic Mucosa	Colon
12	chr3:43618600-43662400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:43622200-43648400	Weak transcription	HMEC	breast
14	chr3:43623600-43644400	Weak transcription	NHEK	skin
15	chr3:43624000-43657600	Weak transcription	Psoas Muscle	Psoas
16	chr3:43625800-43639400	Weak transcription	NHDF-Ad	bronchial
17	chr3:43625800-43662600	Weak transcription	Primary T cells from cord blood	blood
18	chr3:43626000-43643200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr3:43626200-43652400	Weak transcription	Osteobl	bone
20	chr3:43626400-43640200	Weak transcription	A549	lung
21	chr3:43627400-43646200	Weak transcription	HUVEC	blood vessel
22	chr3:43629400-43639400	Weak transcription	K562	blood
23	chr3:43630200-43642200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr3:43631200-43634400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:43631200-43646000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr3:43631400-43634600	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr3:43631800-43633400	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr3:43631800-43634200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
29	chr3:43632000-43633400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
30	chr3:43632000-43634000	Strong transcription	Stomach Smooth Muscle	stomach
31	chr3:43632000-43634600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
32	chr3:43632000-43634600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:43632400-43634000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
34	chr3:43632400-43634000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr3:43632400-43634000	ZNF genes & repeats	Aorta	Aorta
36	chr3:43632400-43634000	ZNF genes & repeats	Lung	lung
37	chr3:43632400-43634000	Strong transcription	Ovary	ovary
38	chr3:43632400-43634400	Strong transcription	Duodenum Mucosa	Duodenum
39	chr3:43632600-43633400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:43632600-43633400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:43632600-43633400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:43632600-43633400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr3:43632600-43633400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr3:43632600-43633400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr3:43632600-43633400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr3:43632600-43633400	ZNF genes & repeats	Adipose Nuclei	Adipose
47	chr3:43632600-43633400	ZNF genes & repeats	Esophagus	oesophagus
48	chr3:43632600-43633400	ZNF genes & repeats	Placenta	Placenta
49	chr3:43632600-43633400	Strong transcription	Gastric	stomach
50	chr3:43632600-43633400	ZNF genes & repeats	Pancreas	Pancrea

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