Variant report

Variant	rs12492694
Chromosome Location	chr3:43471134-43471135
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1013758	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10461013	0.93[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130004	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs11130005	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11715896	0.81[EUR][1000 genomes]
rs12486736	0.82[EUR][1000 genomes]
rs12638282	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs13066902	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13095863	1.00[YRI][hapmap]
rs1351631	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs1384435	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs1564434	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs1588026	0.83[AFR][1000 genomes]
rs1842806	0.88[EUR][1000 genomes]
rs1842807	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1975997	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs2101064	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs34823561	0.80[AFR][1000 genomes]
rs3772160	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4128530	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4264704	0.86[EUR][1000 genomes]
rs4407383	0.92[CEU][hapmap];0.97[EUR][1000 genomes]
rs4505672	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs4547674	0.92[CEU][hapmap];0.98[EUR][1000 genomes]
rs4561805	0.98[EUR][1000 genomes]
rs61102363	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6769576	0.89[CEU][hapmap];0.97[EUR][1000 genomes]
rs6793392	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs737516	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs7621298	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs9311340	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs9809643	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9814737	0.81[EUR][1000 genomes]
rs9815196	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs9824990	0.92[CEU][hapmap];0.98[EUR][1000 genomes]
rs9829067	0.82[EUR][1000 genomes]
rs9830697	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs9834786	0.81[ASN][1000 genomes]
rs9835793	0.86[EUR][1000 genomes]
rs9845142	0.98[EUR][1000 genomes]
rs9852783	0.85[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs9862259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9873316	0.81[EUR][1000 genomes]
rs9881028	0.86[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12492694	ANO10	cis	Whole Blood	GTEx

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43432000-43477800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:43436400-43475800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:43443000-43495600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:43447800-43481200	Weak transcription	Lung	lung
5	chr3:43449000-43473000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr3:43449000-43474400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:43451000-43473000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr3:43455600-43475400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:43455600-43484400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:43455800-43473000	Weak transcription	Fetal Stomach	stomach
11	chr3:43455800-43473600	Weak transcription	Brain Anterior Caudate	brain
12	chr3:43455800-43477200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:43457000-43492800	Weak transcription	K562	blood
14	chr3:43459000-43476000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr3:43459800-43472800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr3:43459800-43496400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:43460600-43473000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr3:43460600-43476000	Weak transcription	Spleen	Spleen
19	chr3:43460800-43473000	Weak transcription	Aorta	Aorta
20	chr3:43460800-43496400	Weak transcription	HSMM	muscle
21	chr3:43461000-43474800	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:43461000-43475400	Weak transcription	Fetal Lung	lung
23	chr3:43461200-43476000	Weak transcription	HUVEC	blood vessel
24	chr3:43463000-43472600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr3:43465000-43475200	Weak transcription	HSMMtube	muscle
26	chr3:43465200-43475600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr3:43465200-43476000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:43465200-43477400	Weak transcription	NHLF	lung
29	chr3:43465600-43474800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:43465600-43476200	Weak transcription	NHDF-Ad	bronchial
31	chr3:43465800-43473200	Weak transcription	Pancreas	Pancrea
32	chr3:43465800-43476600	Weak transcription	Ovary	ovary
33	chr3:43466000-43474600	Weak transcription	Fetal Intestine Large	intestine
34	chr3:43466400-43472800	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr3:43466600-43472600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr3:43466600-43474000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr3:43466600-43474800	Weak transcription	Right Ventricle	heart
38	chr3:43466600-43475600	Weak transcription	Adipose Nuclei	Adipose
39	chr3:43466600-43496400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:43466800-43475600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr3:43467000-43475200	Weak transcription	Fetal Muscle Leg	muscle
42	chr3:43467800-43474600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr3:43467800-43477200	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr3:43468000-43474600	Weak transcription	Brain Angular Gyrus	brain
45	chr3:43468000-43475200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr3:43468000-43477000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr3:43468000-43477200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr3:43468000-43477200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr3:43468200-43472600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr3:43468200-43472600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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