Variant report

Variant	rs11717449
Chromosome Location	chr3:43480142-43480143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs1021049	0.82[ASN][1000 genomes]
rs1026887	0.94[ASN][1000 genomes]
rs1038202	0.91[ASN][1000 genomes]
rs11130006	0.82[ASN][1000 genomes]
rs11706123	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11706130	0.94[ASN][1000 genomes]
rs11708097	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708173	0.85[EUR][1000 genomes]
rs11709165	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11709517	0.82[AMR][1000 genomes]
rs11710079	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710253	0.86[AMR][1000 genomes]
rs11710486	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11710955	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11711651	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11711758	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11712894	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11713382	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714015	0.94[ASN][1000 genomes]
rs11716569	0.91[ASN][1000 genomes]
rs11718482	0.98[ASN][1000 genomes]
rs11719258	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12152260	0.82[ASN][1000 genomes]
rs12374079	0.91[ASN][1000 genomes]
rs13061553	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13072613	0.94[ASN][1000 genomes]
rs13075520	0.94[ASN][1000 genomes]
rs13079636	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13082581	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13084604	0.94[ASN][1000 genomes]
rs13086999	0.94[ASN][1000 genomes]
rs13092838	0.94[ASN][1000 genomes]
rs13097209	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13098202	0.94[ASN][1000 genomes]
rs1384434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1471643	1.00[ASN][1000 genomes]
rs1471644	1.00[ASN][1000 genomes]
rs1482648	0.94[ASN][1000 genomes]
rs1482649	0.94[ASN][1000 genomes]
rs1482650	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1482651	0.82[ASN][1000 genomes]
rs1482652	0.91[ASN][1000 genomes]
rs1482653	0.82[ASN][1000 genomes]
rs1506615	0.80[EUR][1000 genomes]
rs1506616	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17030517	0.82[ASN][1000 genomes]
rs17407745	1.00[ASN][1000 genomes]
rs17407870	0.94[ASN][1000 genomes]
rs17407912	0.94[ASN][1000 genomes]
rs17408925	0.94[ASN][1000 genomes]
rs17643558	0.80[ASN][1000 genomes]
rs2010778	0.94[ASN][1000 genomes]
rs2054552	0.87[ASN][1000 genomes]
rs2054553	0.91[ASN][1000 genomes]
rs2054554	0.91[ASN][1000 genomes]
rs2086653	1.00[ASN][1000 genomes]
rs2127725	0.82[ASN][1000 genomes]
rs2170219	0.82[ASN][1000 genomes]
rs2199892	0.94[ASN][1000 genomes]
rs2219902	0.94[ASN][1000 genomes]
rs2372433	0.94[ASN][1000 genomes]
rs2372436	0.94[ASN][1000 genomes]
rs2372487	0.94[ASN][1000 genomes]
rs2888312	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3048943	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs34031620	0.82[EUR][1000 genomes]
rs34112359	0.86[EUR][1000 genomes]
rs34279519	0.94[ASN][1000 genomes]
rs34548104	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34898315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34919938	0.84[ASN][1000 genomes]
rs35015014	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35133889	0.94[ASN][1000 genomes]
rs35323779	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35418463	0.94[ASN][1000 genomes]
rs35690908	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3755602	0.91[ASN][1000 genomes]
rs3772165	0.91[ASN][1000 genomes]
rs3821381	0.91[ASN][1000 genomes]
rs3902207	0.94[ASN][1000 genomes]
rs4564953	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682690	0.91[ASN][1000 genomes]
rs4682691	0.91[ASN][1000 genomes]
rs4682892	0.94[ASN][1000 genomes]
rs4682897	0.82[ASN][1000 genomes]
rs4682898	0.82[ASN][1000 genomes]
rs6441775	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6441776	0.94[ASN][1000 genomes]
rs6441779	0.92[ASN][1000 genomes]
rs6441780	0.94[ASN][1000 genomes]
rs6441781	0.91[ASN][1000 genomes]
rs6441785	0.84[ASN][1000 genomes]
rs6441786	0.82[ASN][1000 genomes]
rs6441787	0.82[ASN][1000 genomes]
rs66842319	0.94[ASN][1000 genomes]
rs67032102	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6763321	0.87[ASN][1000 genomes]
rs6767983	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768557	0.94[ASN][1000 genomes]
rs6775337	0.94[ASN][1000 genomes]
rs6779864	0.82[ASN][1000 genomes]
rs6781290	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6782442	0.98[ASN][1000 genomes]
rs6797855	0.94[ASN][1000 genomes]
rs6806339	0.87[ASN][1000 genomes]
rs6809134	0.94[ASN][1000 genomes]
rs73072960	0.82[AMR][1000 genomes]
rs73075063	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7428158	0.83[ASN][1000 genomes]
rs7616708	0.91[ASN][1000 genomes]
rs7621271	0.91[ASN][1000 genomes]
rs7648082	0.82[ASN][1000 genomes]
rs7653738	0.91[ASN][1000 genomes]
rs9311341	0.91[ASN][1000 genomes]
rs9682975	0.89[ASN][1000 genomes]
rs9829081	0.94[ASN][1000 genomes]
rs9851894	0.85[ASN][1000 genomes]
rs9863479	0.91[ASN][1000 genomes]
rs9878330	0.91[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43443000-43495600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:43447800-43481200	Weak transcription	Lung	lung
3	chr3:43455600-43484400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:43457000-43492800	Weak transcription	K562	blood
5	chr3:43459800-43496400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:43460800-43496400	Weak transcription	HSMM	muscle
7	chr3:43466600-43496400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:43473400-43541400	Weak transcription	Aorta	Aorta
9	chr3:43473600-43481000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:43473800-43480400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:43473800-43484600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr3:43474200-43480400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:43474200-43484600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:43474200-43504400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr3:43476400-43484800	Weak transcription	HUVEC	blood vessel
16	chr3:43477400-43481200	Weak transcription	Ovary	ovary
17	chr3:43477600-43485400	Weak transcription	Fetal Lung	lung
18	chr3:43479200-43481200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:43479400-43486200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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