Variant report

Variant	rs13079636
Chromosome Location	chr3:43422065-43422066
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs1026887	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1038202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11130000	0.80[EUR][1000 genomes]
rs11706123	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11706130	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11708097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11708173	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs11709165	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11709517	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes]
rs11710079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11710107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11710253	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11710486	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11710955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11711651	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11711758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11712894	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11713382	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11714015	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11715609	0.87[EUR][1000 genomes]
rs11716569	0.80[ASN][1000 genomes]
rs11717380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11717449	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11718482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11719258	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13061553	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13072613	0.83[ASN][1000 genomes]
rs13075520	0.83[ASN][1000 genomes]
rs13082581	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13084604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs13086999	0.87[ASN][1000 genomes]
rs13092838	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13097209	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13098202	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1384434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1471643	0.89[ASN][1000 genomes]
rs1471644	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1482648	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1482649	0.87[ASN][1000 genomes]
rs1482650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1482652	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1506615	0.88[EUR][1000 genomes]
rs1506616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17407745	0.89[ASN][1000 genomes]
rs17407870	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17407912	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17408925	0.83[ASN][1000 genomes]
rs17643558	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2010778	0.87[ASN][1000 genomes]
rs2054554	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2086653	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2199892	0.87[ASN][1000 genomes]
rs2219902	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2372433	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2372436	0.87[ASN][1000 genomes]
rs2372487	0.83[ASN][1000 genomes]
rs2888312	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34031620	0.87[EUR][1000 genomes]
rs34112359	0.82[EUR][1000 genomes]
rs34279519	0.87[ASN][1000 genomes]
rs34548104	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34898315	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35015014	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35133889	0.87[ASN][1000 genomes]
rs35323779	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35418463	0.87[ASN][1000 genomes]
rs35690908	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3755602	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3772165	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs3772167	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3821381	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3902207	0.83[ASN][1000 genomes]
rs4564953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4682892	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6441775	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6441776	0.87[ASN][1000 genomes]
rs6441779	0.82[ASN][1000 genomes]
rs6441780	0.83[ASN][1000 genomes]
rs66842319	0.87[ASN][1000 genomes]
rs67032102	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6767983	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6768557	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6775337	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6781290	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6782442	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6797855	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6809134	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs73072960	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73075063	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7428158	0.81[CHB][hapmap]
rs7616708	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7621271	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7653738	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9311341	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9829081	0.83[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
2	chr3:43408600-43431200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:43408800-43429800	Weak transcription	Right Ventricle	heart
4	chr3:43408800-43431000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:43419800-43427400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:43419800-43427400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr3:43420000-43422600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:43420000-43427400	Weak transcription	Primary T cells from cord blood	blood
9	chr3:43420400-43428000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:43420400-43428800	Weak transcription	Thymus	Thymus
11	chr3:43420400-43429200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:43420400-43429600	Weak transcription	Psoas Muscle	Psoas
13	chr3:43420400-43431000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:43420800-43429600	Weak transcription	HSMMtube	muscle
15	chr3:43421200-43429200	Weak transcription	Left Ventricle	heart
16	chr3:43421200-43431400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:43421200-43431600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr3:43421400-43428000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:43421400-43430800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:43421400-43436200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr3:43421400-43454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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