Variant report

Variant	rs11130000
Chromosome Location	chr3:43387934-43387935
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11708097	0.86[ASW][hapmap];0.86[CEU][hapmap];0.93[GIH][hapmap]
rs11708173	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11709517	1.00[ASW][hapmap];0.91[CEU][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];0.91[EUR][1000 genomes]
rs11710079	0.86[CEU][hapmap]
rs11710107	0.86[CEU][hapmap];0.93[GIH][hapmap]
rs11710253	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11710955	0.86[CEU][hapmap];0.93[GIH][hapmap]
rs11711651	0.86[EUR][1000 genomes]
rs11711758	0.86[ASW][hapmap];0.86[CEU][hapmap];0.93[GIH][hapmap]
rs11712075	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11714015	0.93[GIH][hapmap]
rs11715609	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11717380	0.85[CEU][hapmap]
rs11719258	0.89[EUR][1000 genomes]
rs13079636	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs13082581	0.87[EUR][1000 genomes]
rs13084604	0.93[GIH][hapmap]
rs13092838	0.93[GIH][hapmap]
rs13098202	0.93[GIH][hapmap]
rs1384434	0.85[CEU][hapmap];0.93[GIH][hapmap]
rs1482648	0.93[GIH][hapmap]
rs1482650	0.86[CEU][hapmap];0.93[GIH][hapmap]
rs1506615	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1506616	0.86[ASW][hapmap];0.86[CEU][hapmap];0.93[GIH][hapmap]
rs17407870	0.93[GIH][hapmap]
rs17407912	0.93[GIH][hapmap]
rs17643558	0.83[GIH][hapmap];0.85[LWK][hapmap];0.80[MKK][hapmap]
rs2086653	0.93[GIH][hapmap]
rs2219902	0.93[GIH][hapmap]
rs2372433	0.93[GIH][hapmap]
rs2888312	0.82[CEU][hapmap];0.93[GIH][hapmap]
rs34031620	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35690908	0.89[EUR][1000 genomes]
rs4564953	0.86[CEU][hapmap]
rs4682892	0.93[GIH][hapmap]
rs66498110	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6768557	0.93[GIH][hapmap]
rs6782442	0.93[GIH][hapmap]
rs6809134	0.93[GIH][hapmap]
rs73072960	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73075063	0.89[EUR][1000 genomes]
rs7428158	0.90[GIH][hapmap]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43373400-43393400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:43379600-43392800	Strong transcription	Placenta	Placenta
3	chr3:43380000-43392200	Strong transcription	HepG2	liver
4	chr3:43380000-43392800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:43380800-43391800	Strong transcription	Fetal Stomach	stomach
6	chr3:43380800-43392600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:43380800-43392800	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr3:43380800-43392800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr3:43380800-43393000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:43380800-43393200	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:43381000-43388000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:43381000-43389400	Strong transcription	Fetal Muscle Trunk	muscle
13	chr3:43381000-43392800	Weak transcription	Fetal Brain Male	brain
14	chr3:43381000-43393800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:43381000-43396400	Weak transcription	Stomach Mucosa	stomach
16	chr3:43381200-43388800	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr3:43381200-43392800	Strong transcription	Fetal Intestine Large	intestine
18	chr3:43381400-43392600	Strong transcription	Primary hematopoietic stem cells	blood
19	chr3:43381400-43392800	Strong transcription	Duodenum Mucosa	Duodenum
20	chr3:43381400-43393000	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr3:43381600-43392200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:43381800-43392000	Strong transcription	Brain Anterior Caudate	brain
23	chr3:43381800-43392800	Strong transcription	Brain Germinal Matrix	brain
24	chr3:43382000-43389200	Strong transcription	Fetal Kidney	kidney
25	chr3:43382000-43391600	Strong transcription	Fetal Intestine Small	intestine
26	chr3:43382000-43392200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr3:43382000-43392200	Strong transcription	Primary B cells from peripheral blood	blood
28	chr3:43382000-43393400	Strong transcription	Primary B cells from cord blood	blood
29	chr3:43382200-43388400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr3:43382400-43388600	Weak transcription	A549	lung
31	chr3:43382400-43388800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr3:43382400-43388800	Weak transcription	K562	blood
33	chr3:43382400-43389000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr3:43382400-43391600	Genic enhancers	Primary T cells fromperipheralblood	blood
35	chr3:43382400-43392200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:43382400-43395400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:43382600-43388400	Weak transcription	Brain Substantia Nigra	brain
38	chr3:43382600-43392800	Strong transcription	Liver	Liver
39	chr3:43383000-43388800	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr3:43383000-43391200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
41	chr3:43383200-43388800	Genic enhancers	Primary T cells from cord blood	blood
42	chr3:43383200-43391400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr3:43383200-43391600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr3:43383400-43388400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr3:43383800-43391200	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr3:43384000-43388400	Genic enhancers	Thymus	Thymus
47	chr3:43384200-43389000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr3:43384200-43394000	Weak transcription	Fetal Heart	heart
49	chr3:43384400-43388800	Enhancers	Primary T killer memory cells from peripheral blood	blood
50	chr3:43384400-43388800	Weak transcription	Brain Cingulate Gyrus	brain

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