Variant report

Variant	rs11710079
Chromosome Location	chr3:43473866-43473867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs1021049	0.80[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1026887	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1038202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11130006	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11706123	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11706130	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11708097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708173	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs11709165	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11709517	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs11710107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710253	0.86[AMR][1000 genomes]
rs11710486	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11710955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11711651	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11711758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11712894	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11713382	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714015	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11716569	0.91[ASN][1000 genomes]
rs11717380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11717449	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11719258	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12152260	0.82[ASN][1000 genomes]
rs12374079	0.91[ASN][1000 genomes]
rs13061553	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13072613	0.94[ASN][1000 genomes]
rs13075520	0.94[ASN][1000 genomes]
rs13079636	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13082581	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13084604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13086999	0.94[ASN][1000 genomes]
rs13092838	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13097209	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13098202	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1384434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1471643	1.00[ASN][1000 genomes]
rs1471644	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1482648	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1482649	0.94[ASN][1000 genomes]
rs1482650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1482651	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1482652	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1482653	0.82[ASN][1000 genomes]
rs1506615	0.81[EUR][1000 genomes]
rs1506616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17030517	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17407745	1.00[ASN][1000 genomes]
rs17407870	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17407912	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17408925	0.94[ASN][1000 genomes]
rs17643558	0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2010778	0.94[ASN][1000 genomes]
rs2054552	0.87[ASN][1000 genomes]
rs2054553	0.91[ASN][1000 genomes]
rs2054554	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2086653	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2127725	0.82[ASN][1000 genomes]
rs2170219	0.80[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2199892	0.94[ASN][1000 genomes]
rs2219902	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2372433	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2372436	0.94[ASN][1000 genomes]
rs2372487	0.94[ASN][1000 genomes]
rs2888312	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3048943	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34031620	0.83[EUR][1000 genomes]
rs34112359	0.87[EUR][1000 genomes]
rs34279519	0.94[ASN][1000 genomes]
rs34548104	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34898315	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34919938	0.84[ASN][1000 genomes]
rs35015014	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35133889	0.94[ASN][1000 genomes]
rs35323779	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35418463	0.94[ASN][1000 genomes]
rs35690908	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3755602	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3772165	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3772167	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3821381	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3902207	0.94[ASN][1000 genomes]
rs4564953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682690	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4682691	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4682892	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4682897	0.82[ASN][1000 genomes]
rs4682898	0.82[ASN][1000 genomes]
rs6441775	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6441776	0.94[ASN][1000 genomes]
rs6441779	0.92[ASN][1000 genomes]
rs6441780	0.94[ASN][1000 genomes]
rs6441781	0.91[ASN][1000 genomes]
rs6441785	0.83[CEU][hapmap];0.84[ASN][1000 genomes]
rs6441786	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6441787	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs66842319	0.94[ASN][1000 genomes]
rs67032102	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6763321	0.87[ASN][1000 genomes]
rs6767983	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768557	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6775337	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6779864	0.82[ASN][1000 genomes]
rs6781290	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6782442	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6797855	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6806339	0.87[ASN][1000 genomes]
rs6809134	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs73072960	0.82[AMR][1000 genomes]
rs73075063	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7428158	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs7616708	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7621271	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7648082	0.82[ASN][1000 genomes]
rs7653738	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9311341	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9682975	0.89[ASN][1000 genomes]
rs9829081	0.94[ASN][1000 genomes]
rs9851894	0.85[ASN][1000 genomes]
rs9863479	0.91[ASN][1000 genomes]
rs9878330	0.91[ASN][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43432000-43477800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:43436400-43475800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:43443000-43495600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:43447800-43481200	Weak transcription	Lung	lung
5	chr3:43449000-43474400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:43455600-43475400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:43455600-43484400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:43455800-43477200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:43457000-43492800	Weak transcription	K562	blood
10	chr3:43459000-43476000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr3:43459800-43496400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:43460600-43476000	Weak transcription	Spleen	Spleen
13	chr3:43460800-43496400	Weak transcription	HSMM	muscle
14	chr3:43461000-43474800	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:43461000-43475400	Weak transcription	Fetal Lung	lung
16	chr3:43461200-43476000	Weak transcription	HUVEC	blood vessel
17	chr3:43465000-43475200	Weak transcription	HSMMtube	muscle
18	chr3:43465200-43475600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr3:43465200-43476000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:43465200-43477400	Weak transcription	NHLF	lung
21	chr3:43465600-43474800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:43465600-43476200	Weak transcription	NHDF-Ad	bronchial
23	chr3:43465800-43476600	Weak transcription	Ovary	ovary
24	chr3:43466000-43474600	Weak transcription	Fetal Intestine Large	intestine
25	chr3:43466600-43474000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr3:43466600-43474800	Weak transcription	Right Ventricle	heart
27	chr3:43466600-43475600	Weak transcription	Adipose Nuclei	Adipose
28	chr3:43466600-43496400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:43466800-43475600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr3:43467000-43475200	Weak transcription	Fetal Muscle Leg	muscle
31	chr3:43467800-43474600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:43467800-43477200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr3:43468000-43474600	Weak transcription	Brain Angular Gyrus	brain
34	chr3:43468000-43475200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr3:43468000-43477000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr3:43468000-43477200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr3:43468000-43477200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr3:43468200-43477200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr3:43468400-43477000	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr3:43468400-43478800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr3:43468600-43474800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr3:43468600-43477200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr3:43468800-43475600	Weak transcription	Psoas Muscle	Psoas
44	chr3:43470000-43476000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr3:43470400-43476600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr3:43472000-43474600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr3:43472600-43474000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr3:43472600-43474000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr3:43472600-43474200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:43472600-43474200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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