Variant report

Variant	rs11711651
Chromosome Location	chr3:43402764-43402765
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43400498..43402776-chr3:43452077..43454279,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1026887	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1038202	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11130000	0.86[EUR][1000 genomes]
rs11706123	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11706130	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11708097	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11708173	0.95[CEU][hapmap];0.99[EUR][1000 genomes]
rs11709165	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11709517	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs11710079	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11710107	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11710253	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11710486	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11710955	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11711758	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11712075	0.84[EUR][1000 genomes]
rs11712894	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11713382	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11714015	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11715609	0.93[EUR][1000 genomes]
rs11717380	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11717449	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11718482	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11719258	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13061553	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13079636	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13082581	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13084604	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs13092838	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs13097209	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13098202	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1384434	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1471644	0.91[CHB][hapmap]
rs1482648	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1482650	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1506615	0.94[EUR][1000 genomes]
rs1506616	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17407870	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17407912	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17643558	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2054554	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2086653	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2219902	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2372433	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2888312	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34031620	0.94[EUR][1000 genomes]
rs34548104	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34898315	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35015014	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35323779	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35690908	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4564953	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4682892	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6441775	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66498110	0.84[EUR][1000 genomes]
rs67032102	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6767983	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6768557	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6775337	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6781290	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6782442	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6797855	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6809134	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs73072960	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73075063	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43390600-43403600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:43390600-43406600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:43390600-43407200	Weak transcription	Gastric	stomach
4	chr3:43390800-43405200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:43391400-43405400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:43391600-43404200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
8	chr3:43392200-43419600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr3:43393000-43405000	Weak transcription	Pancreas	Pancrea
10	chr3:43395800-43406600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:43396000-43405600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr3:43396600-43404000	Weak transcription	Spleen	Spleen
13	chr3:43396600-43404200	Weak transcription	Fetal Stomach	stomach
14	chr3:43396800-43403600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:43396800-43407000	Weak transcription	Aorta	Aorta
16	chr3:43396800-43407200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:43397000-43406400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr3:43400000-43419400	Weak transcription	Primary T cells from cord blood	blood
19	chr3:43401000-43405000	Weak transcription	Thymus	Thymus
20	chr3:43401200-43404200	Enhancers	H1 Cell Line	embryonic stem cell
21	chr3:43401400-43414600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:43401600-43405000	Weak transcription	Fetal Intestine Small	intestine
23	chr3:43402000-43402800	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr3:43402000-43402800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr3:43402000-43403000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr3:43402000-43403000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr3:43402000-43403200	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr3:43402000-43403200	Enhancers	Left Ventricle	heart
29	chr3:43402000-43403600	Enhancers	Placenta	Placenta
30	chr3:43402000-43407000	Enhancers	Fetal Muscle Leg	muscle
31	chr3:43402200-43402800	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr3:43402200-43403000	Enhancers	H9 Cell Line	embryonic stem cell
33	chr3:43402200-43403200	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr3:43402200-43404200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr3:43402200-43405200	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr3:43402200-43405600	Enhancers	HSMMtube	muscle
37	chr3:43402400-43402800	Enhancers	Esophagus	oesophagus
38	chr3:43402400-43402800	Enhancers	HSMM	muscle
39	chr3:43402400-43403000	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr3:43402400-43403000	Enhancers	Colon Smooth Muscle	Colon
41	chr3:43402400-43413400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr3:43402600-43402800	Enhancers	Adipose Nuclei	Adipose
43	chr3:43402600-43403000	Enhancers	Right Atrium	heart
44	chr3:43402600-43403000	Enhancers	Stomach Smooth Muscle	stomach
45	chr3:43402600-43406400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr3:43402600-43407000	Enhancers	Fetal Muscle Trunk	muscle
47	chr3:43402600-43408600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr3:43402600-43413600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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