Variant report

Variant	rs11711758
Chromosome Location	chr3:43433144-43433145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43431381..43434005-chr3:43447529..43451601,3	K562	blood:
2	chr3:43432210..43433882-chr3:43437782..43439964,2	K562	blood:

Extended variants
information (count: 104 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs1026887	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1038202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11706123	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11706130	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11708097	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11708173	0.86[ASW][hapmap];0.91[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs11709165	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11709517	0.86[ASW][hapmap];0.87[CEU][hapmap];0.91[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.93[MEX][hapmap];0.85[TSI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11710079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11710107	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11710253	0.88[AMR][1000 genomes]
rs11710486	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11710955	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11711651	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11712894	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11713382	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11714015	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap];0.80[TSI][hapmap];0.85[ASN][1000 genomes]
rs11715609	0.82[EUR][1000 genomes]
rs11716569	0.80[CEU][hapmap];0.82[ASN][1000 genomes]
rs11717380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11717449	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11718482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11719258	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12374079	0.81[ASN][1000 genomes]
rs13061553	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13072613	0.85[ASN][1000 genomes]
rs13075520	0.85[ASN][1000 genomes]
rs13079636	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13082581	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13084604	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13086999	0.89[ASN][1000 genomes]
rs13092838	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.85[ASN][1000 genomes]
rs13097209	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13098202	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.89[ASN][1000 genomes]
rs1384434	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1471643	0.91[ASN][1000 genomes]
rs1471644	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs1482648	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.89[ASN][1000 genomes]
rs1482649	0.89[ASN][1000 genomes]
rs1482650	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1482652	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];0.80[TSI][hapmap];0.81[ASN][1000 genomes]
rs1506615	0.83[EUR][1000 genomes]
rs1506616	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17407745	0.91[ASN][1000 genomes]
rs17407870	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.80[TSI][hapmap];0.89[ASN][1000 genomes]
rs17407912	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];0.89[ASN][1000 genomes]
rs17408925	0.85[ASN][1000 genomes]
rs17643558	0.90[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2010778	0.89[ASN][1000 genomes]
rs2054552	0.80[CEU][hapmap]
rs2054553	0.81[ASN][1000 genomes]
rs2054554	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2086653	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.91[ASN][1000 genomes]
rs2199892	0.89[ASN][1000 genomes]
rs2219902	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];0.80[TSI][hapmap];0.89[ASN][1000 genomes]
rs2372433	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.89[ASN][1000 genomes]
rs2372436	0.89[ASN][1000 genomes]
rs2372487	0.85[ASN][1000 genomes]
rs2888312	0.87[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34031620	0.83[EUR][1000 genomes]
rs34112359	0.88[EUR][1000 genomes]
rs34279519	0.89[ASN][1000 genomes]
rs34548104	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34898315	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35015014	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35133889	0.89[ASN][1000 genomes]
rs35323779	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35418463	0.89[ASN][1000 genomes]
rs35690908	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3755602	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.92[MKK][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3772165	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3772167	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3821381	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3902207	0.85[ASN][1000 genomes]
rs4564953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4682690	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4682691	1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4682892	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.85[ASN][1000 genomes]
rs6441775	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6441776	0.89[ASN][1000 genomes]
rs6441779	0.83[ASN][1000 genomes]
rs6441780	0.85[ASN][1000 genomes]
rs6441781	0.81[ASN][1000 genomes]
rs66842319	0.89[ASN][1000 genomes]
rs67032102	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6767983	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6768557	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.89[ASN][1000 genomes]
rs6775337	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6781290	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6782442	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6797855	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6806339	0.81[ASN][1000 genomes]
rs6809134	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.85[ASN][1000 genomes]
rs73072960	0.84[AMR][1000 genomes]
rs73075063	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7428158	0.81[CHB][hapmap];0.97[GIH][hapmap];0.80[TSI][hapmap]
rs7616708	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7621271	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7653738	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.92[MKK][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9311341	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9682975	0.80[ASN][1000 genomes]
rs9829081	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9863479	0.81[ASN][1000 genomes]
rs9878330	0.81[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11711758	TMEM42	cis	cerebellum	SCAN
rs11711758	CXCR6	cis	cerebellum	SCAN

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
2	chr3:43421400-43436200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:43421400-43454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:43427400-43433400	Enhancers	Primary T cells fromperipheralblood	blood
5	chr3:43428200-43433200	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr3:43428400-43436400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:43428400-43441800	Weak transcription	Fetal Stomach	stomach
8	chr3:43428800-43447600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:43429200-43433400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr3:43429200-43436600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr3:43430000-43449400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:43430000-43460200	Weak transcription	Aorta	Aorta
13	chr3:43430600-43433400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr3:43430600-43433400	Enhancers	Fetal Muscle Leg	muscle
15	chr3:43430600-43442600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:43431000-43435800	Weak transcription	Colon Smooth Muscle	Colon
17	chr3:43431200-43436000	Enhancers	HUVEC	blood vessel
18	chr3:43431600-43435600	Weak transcription	Fetal Lung	lung
19	chr3:43431800-43433400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr3:43431800-43433600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr3:43431800-43436200	Weak transcription	Fetal Kidney	kidney
22	chr3:43431800-43440400	Weak transcription	HSMMtube	muscle
23	chr3:43431800-43447000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:43432000-43433200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr3:43432000-43433200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr3:43432000-43433600	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr3:43432000-43435000	Weak transcription	Right Ventricle	heart
28	chr3:43432000-43435800	Weak transcription	Osteobl	bone
29	chr3:43432000-43445600	Weak transcription	K562	blood
30	chr3:43432000-43446600	Weak transcription	HSMM	muscle
31	chr3:43432000-43450800	Weak transcription	Esophagus	oesophagus
32	chr3:43432000-43453600	Weak transcription	Gastric	stomach
33	chr3:43432000-43460200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr3:43432000-43477800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:43432200-43433200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr3:43432200-43433400	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr3:43432200-43433400	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr3:43432200-43435000	Weak transcription	Placenta	Placenta
39	chr3:43432200-43435000	Weak transcription	Left Ventricle	heart
40	chr3:43432200-43435000	Weak transcription	Right Atrium	heart
41	chr3:43432200-43435200	Weak transcription	Adipose Nuclei	Adipose
42	chr3:43432200-43435600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr3:43432200-43435600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr3:43432200-43441200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr3:43432200-43443400	Weak transcription	Duodenum Mucosa	Duodenum
46	chr3:43432200-43447000	Weak transcription	Small Intestine	intestine
47	chr3:43432200-43448000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr3:43432200-43453800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr3:43432400-43434400	Weak transcription	Primary hematopoietic stem cells	blood
50	chr3:43432400-43435200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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