Variant report

Variant	rs1471644
Chromosome Location	chr3:43488004-43488005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43467502..43470080-chr3:43487634..43489298,2	K562	blood:
2	chr3:43480844..43483774-chr3:43485563..43488384,2	K562	blood:

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs1021049	0.90[CHB][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1026887	1.00[CHB][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1038202	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs11130006	0.91[CHB][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11706123	0.96[ASN][1000 genomes]
rs11706130	1.00[CHB][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11708097	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11709165	0.98[ASN][1000 genomes]
rs11709517	0.90[CHB][hapmap]
rs11710079	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11710107	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11710486	0.87[ASN][1000 genomes]
rs11710955	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11711758	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs11712894	0.98[ASN][1000 genomes]
rs11713382	1.00[ASN][1000 genomes]
rs11714015	1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11716569	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11717380	1.00[CHB][hapmap]
rs11717449	1.00[ASN][1000 genomes]
rs11718482	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12152260	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12374079	0.91[ASN][1000 genomes]
rs13061553	0.98[ASN][1000 genomes]
rs13072613	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13075520	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13079636	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs13084604	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13086999	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13092838	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13097209	0.96[ASN][1000 genomes]
rs13098202	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1384434	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs1471643	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1482648	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1482649	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1482650	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1482651	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs1482652	1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1482653	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1506616	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs17030517	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs17407745	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17407870	1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17407912	1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17408925	0.94[ASN][1000 genomes]
rs17643558	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs2010778	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2054552	0.88[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2054553	0.91[ASN][1000 genomes]
rs2054554	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs2086653	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127725	0.82[ASN][1000 genomes]
rs2170219	0.90[CHB][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2199892	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2219902	1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2372433	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2372436	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2372487	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2888312	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3048943	0.81[ASN][1000 genomes]
rs34279519	0.94[ASN][1000 genomes]
rs34548104	1.00[ASN][1000 genomes]
rs34898315	1.00[ASN][1000 genomes]
rs34919938	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35015014	1.00[ASN][1000 genomes]
rs35133889	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35323779	0.91[ASN][1000 genomes]
rs35418463	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3755602	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3772165	0.90[CHB][hapmap];0.91[ASN][1000 genomes]
rs3772167	1.00[CHB][hapmap]
rs3821381	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs3902207	0.94[ASN][1000 genomes]
rs4564953	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4682690	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs4682691	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs4682892	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4682897	0.82[ASN][1000 genomes]
rs4682898	0.90[CHB][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6441775	0.89[ASN][1000 genomes]
rs6441776	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6441779	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6441780	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6441781	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441785	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6441786	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs6441787	0.87[YRI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66842319	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67032102	1.00[ASN][1000 genomes]
rs6763321	0.87[ASN][1000 genomes]
rs6767983	1.00[ASN][1000 genomes]
rs6768557	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6775337	1.00[CHB][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6779864	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6781290	0.98[ASN][1000 genomes]
rs6782442	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6797855	1.00[CHB][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6806339	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6809134	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7428158	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7616708	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs7621271	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs7648082	0.82[ASN][1000 genomes]
rs7653738	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9311341	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs9682975	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9829081	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9839558	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9851894	0.85[ASN][1000 genomes]
rs9863479	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9878330	0.91[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43443000-43495600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:43457000-43492800	Weak transcription	K562	blood
3	chr3:43459800-43496400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:43460800-43496400	Weak transcription	HSMM	muscle
5	chr3:43466600-43496400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:43473400-43541400	Weak transcription	Aorta	Aorta
7	chr3:43474200-43504400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr3:43480600-43496400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:43484800-43492600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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