Variant report

Variant	rs11717380
Chromosome Location	chr3:43479964-43479965
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1021049	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1026887	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1038202	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11130006	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11706130	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11708097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11708173	0.90[CEU][hapmap]
rs11709517	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11710079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11710107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11710955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11711758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11714015	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11718482	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13079636	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13084604	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13092838	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13098202	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1384434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1471644	1.00[CHB][hapmap]
rs1482648	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1482650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1482651	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1482652	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1506616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17030517	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17407870	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17407912	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17643558	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2054554	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2086653	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2170219	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2219902	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2372433	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2888312	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3755602	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3772165	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs3772167	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3821381	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4564953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4682690	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4682691	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4682892	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4682898	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6441785	0.83[CEU][hapmap]
rs6441786	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6441787	1.00[JPT][hapmap]
rs6768557	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6775337	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6782442	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6797855	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6809134	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7616708	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7621271	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7653738	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9311341	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43443000-43495600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:43447800-43481200	Weak transcription	Lung	lung
3	chr3:43455600-43484400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:43457000-43492800	Weak transcription	K562	blood
5	chr3:43459800-43496400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:43460800-43496400	Weak transcription	HSMM	muscle
7	chr3:43466600-43496400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:43473400-43541400	Weak transcription	Aorta	Aorta
9	chr3:43473600-43481000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:43473800-43480400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:43473800-43484600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr3:43474200-43480400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:43474200-43484600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:43474200-43504400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr3:43476400-43484800	Weak transcription	HUVEC	blood vessel
16	chr3:43477400-43481200	Weak transcription	Ovary	ovary
17	chr3:43477600-43485400	Weak transcription	Fetal Lung	lung
18	chr3:43479200-43481200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:43479400-43486200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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