Variant report

Variant	rs11710486
Chromosome Location	chr3:43431768-43431769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43429740..43432675-chr3:43434360..43436612,3	K562	blood:
2	chr3:43431381..43434005-chr3:43447529..43451601,3	K562	blood:
3	chr3:43429738..43431933-chr3:43437625..43439839,2	K562	blood:
4	chr3:43262007..43263979-chr3:43430198..43432091,2	K562	blood:
5	chr3:43430134..43432675-chr3:43434360..43436612,2	K562	blood:
6	chr3:43430089..43432082-chr3:43440172..43442305,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1026887	0.85[ASN][1000 genomes]
rs11706123	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11706130	0.82[ASN][1000 genomes]
rs11708097	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11708173	0.83[EUR][1000 genomes]
rs11709165	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11709517	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11710079	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11710107	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11710253	0.89[AMR][1000 genomes]
rs11710955	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11711651	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11711758	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11712894	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11713382	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11714015	0.82[ASN][1000 genomes]
rs11717449	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11718482	0.89[ASN][1000 genomes]
rs11719258	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13061553	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13072613	0.82[ASN][1000 genomes]
rs13075520	0.82[ASN][1000 genomes]
rs13079636	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13082581	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13084604	0.85[ASN][1000 genomes]
rs13086999	0.85[ASN][1000 genomes]
rs13092838	0.82[ASN][1000 genomes]
rs13097209	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13098202	0.85[ASN][1000 genomes]
rs1384434	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1471643	0.87[ASN][1000 genomes]
rs1471644	0.87[ASN][1000 genomes]
rs1482648	0.85[ASN][1000 genomes]
rs1482649	0.85[ASN][1000 genomes]
rs1482650	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1506615	0.80[EUR][1000 genomes]
rs1506616	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17407745	0.87[ASN][1000 genomes]
rs17407870	0.85[ASN][1000 genomes]
rs17407912	0.85[ASN][1000 genomes]
rs17408925	0.82[ASN][1000 genomes]
rs17643558	0.85[ASN][1000 genomes]
rs2010778	0.85[ASN][1000 genomes]
rs2086653	0.87[ASN][1000 genomes]
rs2199892	0.85[ASN][1000 genomes]
rs2219902	0.85[ASN][1000 genomes]
rs2372433	0.85[ASN][1000 genomes]
rs2372436	0.85[ASN][1000 genomes]
rs2372487	0.82[ASN][1000 genomes]
rs2888312	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34112359	0.86[EUR][1000 genomes]
rs34279519	0.85[ASN][1000 genomes]
rs34548104	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34898315	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35015014	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35133889	0.85[ASN][1000 genomes]
rs35323779	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35418463	0.85[ASN][1000 genomes]
rs35690908	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3902207	0.82[ASN][1000 genomes]
rs4564953	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4682892	0.82[ASN][1000 genomes]
rs6441775	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441776	0.85[ASN][1000 genomes]
rs6441779	0.80[ASN][1000 genomes]
rs6441780	0.82[ASN][1000 genomes]
rs66842319	0.85[ASN][1000 genomes]
rs67032102	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6767983	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6768557	0.85[ASN][1000 genomes]
rs6775337	0.85[ASN][1000 genomes]
rs6781290	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6782442	0.89[ASN][1000 genomes]
rs6797855	0.82[ASN][1000 genomes]
rs6809134	0.82[ASN][1000 genomes]
rs73072960	0.85[AMR][1000 genomes]
rs73075063	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9829081	0.82[ASN][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
2	chr3:43421400-43436200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:43421400-43454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:43427200-43432000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:43427400-43433400	Enhancers	Primary T cells fromperipheralblood	blood
6	chr3:43428200-43433200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr3:43428400-43436400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:43428400-43441800	Weak transcription	Fetal Stomach	stomach
9	chr3:43428800-43432200	Enhancers	Fetal Thymus	thymus
10	chr3:43428800-43432600	Enhancers	Thymus	Thymus
11	chr3:43428800-43432800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:43428800-43432800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:43428800-43447600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:43429000-43432400	Enhancers	Primary hematopoietic stem cells	blood
15	chr3:43429200-43432200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr3:43429200-43433400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:43429200-43436600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr3:43429400-43432400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr3:43429600-43431800	Enhancers	HSMMtube	muscle
20	chr3:43429600-43432200	Enhancers	Adipose Nuclei	Adipose
21	chr3:43429600-43432200	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr3:43429600-43432400	Enhancers	Psoas Muscle	Psoas
23	chr3:43429800-43432400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
24	chr3:43430000-43449400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:43430000-43460200	Weak transcription	Aorta	Aorta
26	chr3:43430200-43432200	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr3:43430200-43432200	Enhancers	HepG2	liver
28	chr3:43430400-43432200	Enhancers	Small Intestine	intestine
29	chr3:43430600-43431800	Enhancers	Fetal Kidney	kidney
30	chr3:43430600-43432200	Enhancers	Stomach Mucosa	stomach
31	chr3:43430600-43433400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr3:43430600-43433400	Enhancers	Fetal Muscle Leg	muscle
33	chr3:43430600-43442600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:43430800-43431800	Enhancers	Primary B cells from peripheral blood	blood
35	chr3:43430800-43431800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr3:43430800-43432000	Enhancers	HSMM	muscle
37	chr3:43430800-43432000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr3:43430800-43432200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:43430800-43432400	Enhancers	NHEK	skin
40	chr3:43431000-43431800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
41	chr3:43431000-43431800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
42	chr3:43431000-43431800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:43431000-43431800	Enhancers	Fetal Brain Male	brain
44	chr3:43431000-43431800	Enhancers	NH-A	brain
45	chr3:43431000-43432000	Enhancers	NHLF	lung
46	chr3:43431000-43432000	Enhancers	Osteobl	bone
47	chr3:43431000-43432200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr3:43431000-43432200	Enhancers	HMEC	breast
49	chr3:43431000-43435800	Weak transcription	Colon Smooth Muscle	Colon
50	chr3:43431200-43431800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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