Variant report

Variant	rs73072960
Chromosome Location	chr3:43320065-43320066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43318026..43323143-chr3:43324896..43329245,5	K562	blood:
2	chr3:43314948..43317591-chr3:43318752..43320384,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163788	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11130000	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11706123	0.82[AMR][1000 genomes]
rs11708097	0.84[AMR][1000 genomes]
rs11708173	0.95[AFR][1000 genomes]
rs11709165	0.82[AMR][1000 genomes]
rs11709517	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710079	0.82[AMR][1000 genomes]
rs11710107	0.82[AMR][1000 genomes]
rs11710253	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710486	0.85[AMR][1000 genomes]
rs11710955	0.84[AMR][1000 genomes]
rs11711651	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11711758	0.84[AMR][1000 genomes]
rs11712075	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11712894	0.82[AMR][1000 genomes]
rs11715609	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11717449	0.82[AMR][1000 genomes]
rs11719258	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13061553	0.82[AMR][1000 genomes]
rs13079636	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs13082581	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1384434	0.82[AMR][1000 genomes]
rs1482650	0.84[AMR][1000 genomes]
rs1506615	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1506616	0.84[AMR][1000 genomes]
rs2888312	0.84[AMR][1000 genomes]
rs34031620	0.95[AFR][1000 genomes]
rs34898315	0.82[AMR][1000 genomes]
rs35015014	0.84[AMR][1000 genomes]
rs35323779	0.84[AMR][1000 genomes]
rs35690908	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4564953	0.82[AMR][1000 genomes]
rs6441775	0.84[AMR][1000 genomes]
rs66498110	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs67032102	0.84[AMR][1000 genomes]
rs6767983	0.84[AMR][1000 genomes]
rs6781290	0.82[AMR][1000 genomes]
rs73075063	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752008	chr3:43285369-43360879	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43318800-43327800	Weak transcription	Small Intestine	intestine

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