Variant report

Variant	rs3774792
Chromosome Location	chr3:43747352-43747353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17075971	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs3733155	0.81[CEU][hapmap]
rs3774790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4234430	0.90[CHB][hapmap]
rs4325902	0.80[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4432612	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4682900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56136723	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6441787	1.00[CHB][hapmap]
rs73089215	0.89[ASN][1000 genomes]
rs7630010	0.90[CHB][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43733200-43749200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:43733400-43753200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:43733400-43767800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:43733600-43753600	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:43733600-43767400	Weak transcription	Fetal Brain Male	brain
6	chr3:43733600-43768000	Weak transcription	Fetal Kidney	kidney
7	chr3:43733800-43749400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:43734000-43751800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr3:43734000-43753200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr3:43734200-43747600	Weak transcription	Spleen	Spleen
11	chr3:43734200-43749600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:43734200-43753600	Weak transcription	Primary T cells from cord blood	blood
13	chr3:43734200-43753600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr3:43734200-43754800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr3:43734400-43751800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:43734400-43753200	Weak transcription	Fetal Thymus	thymus
17	chr3:43734400-43753200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr3:43734400-43753200	Weak transcription	HSMMtube	muscle
19	chr3:43734400-43762200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr3:43734600-43749400	Weak transcription	Brain Angular Gyrus	brain
21	chr3:43734600-43749400	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:43734600-43751800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr3:43734600-43753200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr3:43734600-43753200	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr3:43734600-43753400	Weak transcription	Fetal Brain Female	brain
26	chr3:43734800-43749400	Weak transcription	Brain Substantia Nigra	brain
27	chr3:43734800-43753600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr3:43734800-43774400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr3:43735000-43753200	Weak transcription	Right Ventricle	heart
30	chr3:43735000-43761200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:43735200-43753400	Weak transcription	Brain Anterior Caudate	brain
32	chr3:43736600-43749000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr3:43736800-43748000	Weak transcription	Pancreas	Pancrea
34	chr3:43736800-43748800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:43736800-43749200	Weak transcription	Esophagus	oesophagus
36	chr3:43738000-43762200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr3:43738200-43753200	Weak transcription	Fetal Lung	lung
38	chr3:43738400-43753400	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr3:43738400-43753600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr3:43738600-43749600	Weak transcription	Primary B cells from cord blood	blood
41	chr3:43738600-43753200	Weak transcription	Gastric	stomach
42	chr3:43738600-43753400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr3:43738600-43763600	Weak transcription	Small Intestine	intestine
44	chr3:43738800-43753600	Weak transcription	Psoas Muscle	Psoas
45	chr3:43738800-43763600	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr3:43739600-43749000	Weak transcription	Stomach Mucosa	stomach
47	chr3:43740200-43748600	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr3:43740400-43762000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr3:43740600-43753200	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr3:43740600-43753400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links