Variant report

Variant	rs2017739
Chromosome Location	chr9:93853287-93853288
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs389602	0.81[AFR][1000 genomes]
rs55687842	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72739496	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052912	chr9:93846078-93866362	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93847800-93855600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:93852600-93853600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr9:93852600-93853800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:93852600-93855400	Weak transcription	Fetal Intestine Small	intestine
5	chr9:93852600-93859800	Weak transcription	Fetal Heart	heart
6	chr9:93852600-93861600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:93852800-93861200	Weak transcription	NHLF	lung
8	chr9:93853200-93857800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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