Variant report

Variant	rs389602
Chromosome Location	chr9:93857254-93857255
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2017739	0.81[AFR][1000 genomes]
rs386293	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs393369	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs429819	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052912	chr9:93846078-93866362	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93852600-93859800	Weak transcription	Fetal Heart	heart
2	chr9:93852600-93861600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:93852800-93861200	Weak transcription	NHLF	lung
4	chr9:93853200-93857800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:93854200-93860600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:93855800-93860600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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