Variant report

Variant	rs393369
Chromosome Location	chr9:93851440-93851441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs386293	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs389602	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs429819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052912	chr9:93846078-93866362	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs393369	LOC440173	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93847800-93855600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:93848200-93851600	Weak transcription	HepG2	liver
3	chr9:93848200-93852200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:93849800-93851800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:93849800-93852000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:93849800-93852200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr9:93850000-93851800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:93850000-93852000	Weak transcription	Fetal Intestine Small	intestine
9	chr9:93851400-93851600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:93851400-93851600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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